Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR196W
Length:
576
Number of sequences:
5887
Description:
YLR196W PWP1 SGDID:S000004186, Chr XII from 543968-545698, Genome Release 64-1-1, Verified ORF, "Protein with WD-40 repeats involved in rRNA processing; associates with trans-acting ribosome biogenesis factors; similar to beta-transducin superfamily"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
361Q80T85    946   DCAF5_MOUSE DDB1- and CUL4-associated factor ...1051.1     35.8     27     50GO:0080008; C:CUL4 RING ubiquitin ligase complex; ISS:UniProtKB.::GO:0005739; C:mitochondrion; IDA:MGI.
362Q0UXP3    471   YTM1_PHANO Ribosome biogenesis protein YTM1 O...1531.1     35.8     26     48GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
363P58404    760   STRN4_MOUSE Striatin-4 OS=Mus musculus (Mouse...1041.2     35.8     33     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
GO:0005516; F:calmodulin binding; IEA:UniProtKB-KW.
364Q75BY3    425   PRP46_ASHGO Pre-mRNA-splicing factor PRP46 OS...1681.2     35.8     23     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
365Q0V786    425   JIP5_PHANO WD repeat-containing protein JIP5 ...1751.2     35.8     27     42GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
366Q6FXI8    419   HAT2_CANGA Histone acetyltransferase type B s...1971.2     35.4     23     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
367Q6C709    441   PRP46_YARLI Pre-mRNA-splicing factor PRP46 OS...1701.2     35.4     22     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
368B8M7Q5    667   SCONB_TALSN Probable E3 ubiquitin ligase comp...1723.8     34.3     24     42
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
369A8PT44    528   YTM1_MALGO Ribosome biogenesis protein YTM1 O...781.2     35.8     27     53GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
370Q9USN3    777   UTP13_SCHPO Probable U3 small nucleolar RNA-a...1013     34.7     29     50GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:PomBase.::GO:0032040; C:small-subunit processome; IEA:InterPro.
GO:0030515; F:snoRNA binding; ISS:PomBase.
GO:0030490; P:maturation of SSU-rRNA; ISS:PomBase.
371P69104    318   GBLP_TRYBR Guanine nucleotide-binding protein...2051.3     35.4     23     40
372P69103    318   GBLP_TRYBB Guanine nucleotide-binding protein...2051.3     35.4     23     40
373P49846    704   TAF5_DROME Transcription initiation factor TF...1461.3     35.8     23     42GO:0000124; C:SAGA complex; IPI:FlyBase.::GO:0005669; C:transcription factor TFIID complex; IDA:FlyBase.
GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:FlyBase.::GO:0051123; P:RNA polymerase II transcriptional preinitiation complex assembly; IDA:GOC.
374O43172    522   PRP4_HUMAN U4/U6 small nuclear ribonucleoprot...531.3     35.4     36     64GO:0015030; C:Cajal body; IDA:BHF-UCL.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; NAS:UniProtKB.::GO:0071001; C:U4/U6 snRNP; IDA:BHF-UCL.
GO:0005515; F:protein binding; IPI:BHF-UCL.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:BHF-UCL.
375Q2KID6    513   PLRG1_BOVIN Pleiotropic regulator 1 OS=Bos ta...1591.3     35.4     26     45GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
376Q9LI89    422   FBK70_ARATH F-box/kelch-repeat protein At3g27...821.3     35.4     30     46GO:0005634; C:nucleus; IDA:TAIR.
377Q55FJ2    766   WDR91_DICDI WD repeat-containing protein 91 h...1841.3     35.8     27     50
378Q6BU94    417   PRP46_DEBHA Pre-mRNA-splicing factor PRP46 OS...1771.3     35.4     22     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
379B7PS00    411   LIS1_IXOSC Lissencephaly-1 homolog OS=Ixodes ...791.3     35.4     33     52GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0005815; C:microtubule organizing center; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
380A7ETB3    667   MDV1_SCLS1 Mitochondrial division protein 1 O...2412     35     22     40GO:0005741; C:mitochondrial outer membrane; IEA:UniProtKB-SubCell.
381Q5NVD0    521   PRP4_PONAB U4/U6 small nuclear ribonucleoprot...531.3     35.4     36     64GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
382Q3MHE2    521   PRP4_BOVIN U4/U6 small nuclear ribonucleoprot...531.3     35.4     36     64GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
383Q93847    395   YZLL_CAEEL Uncharacterized WD repeat-containi...1491.4     35.4     25     43
384Q75AV4    449   PFS2_ASHGO Polyadenylation factor subunit 2 O...1841.4     35.4     23     42GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007059; P:chromosome segregation; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
385B4KGX9    322   EIF3I_DROMO Eukaryotic translation initiation...1581.4     35     26     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
386Q9FE91    419   C3H62_ARATH Zinc finger CCCH domain-containin...1711.4     35.4     21     41
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
387A7RWD2    327   CIAO1_NEMVE Probable cytosolic iron-sulfur pr...921.4     35     32     51
GO:0016226; P:iron-sulfur cluster assembly; ISS:UniProtKB.
388B4JB43    326   EIF3I_DROGR Eukaryotic translation initiation...1581.4     35     26     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
389Q5I0B9    622   ATG16_XENTR Autophagy-related protein 16 OS=X...851.5     35.4     27     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
GO:0006914; P:autophagy; IEA:UniProtKB-KW.::GO:0015031; P:protein transport; IEA:UniProtKB-KW.
390Q5AZM3    1282   SEC31_EMENI Protein transport protein sec31 O...1781.5     35.4     23     43GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0012507; C:ER to Golgi transport vesicle membrane; IEA:UniProtKB-SubCell.
GO:0015031; P:protein transport; IEA:UniProtKB-KW.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
391O43660    514   PLRG1_HUMAN Pleiotropic regulator 1 OS=Homo s...1591.5     35.4     26     45GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0004871; F:signal transducer activity; TAS:ProtInc.::GO:0003714; F:transcription corepressor activity; TAS:ProtInc.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB.
records
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