Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR196W
Length:
576
Number of sequences:
5887
Description:
YLR196W PWP1 SGDID:S000004186, Chr XII from 543968-545698, Genome Release 64-1-1, Verified ORF, "Protein with WD-40 repeats involved in rRNA processing; associates with trans-acting ribosome biogenesis factors; similar to beta-transducin superfamily"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
211B6Q4Z5    660   SCONB_PENMQ Probable E3 ubiquitin ligase comp...3340.24     38.1     20     38
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
212Q00664    444   LIS1_EMENI Nuclear distribution protein nudF ...510.16     38.5     43     55GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
213A7RHG8    416   WDR12_NEMVE Ribosome biogenesis protein WDR12...1380.16     38.5     29     46GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
214Q40687    380   GBB_ORYSJ Guanine nucleotide-binding protein ...1850.16     38.1     28     45
GO:0005515; F:protein binding; IPI:IntAct.::GO:0004871; F:signal transducer activity; IEA:UniProtKB-KW.
GO:0007186; P:G-protein coupled receptor signaling pathway; IEP:Gramene.
215Q1DNW5    416   JIP5_COCIM WD repeat-containing protein JIP5 ...1270.16     38.5     27     46GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
216Q5R8K2    431   CSTF1_PONAB Cleavage stimulation factor subun...1710.17     38.1     26     46GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
217Q8R537    318   PEX7_CRIGR Peroxisomal targeting signal 2 rec...1300.9     35.8     21     39GO:0005777; C:peroxisome; IEA:UniProtKB-SubCell.
GO:0005053; F:peroxisome matrix targeting signal-2 binding; ISS:UniProtKB.
GO:0008611; P:ether lipid biosynthetic process; ISS:UniProtKB.::GO:0016558; P:protein import into peroxisome matrix; ISS:UniProtKB.
218P26308    340   GBB1_DROME Guanine nucleotide-binding protein...1450.18     38.1     27     45GO:0005875; C:microtubule associated complex; IDA:FlyBase.
GO:0004871; F:signal transducer activity; IEA:UniProtKB-KW.
GO:0007015; P:actin filament organization; IMP:FlyBase.::GO:0045176; P:apical protein localization; TAS:FlyBase.::GO:0055059; P:asymmetric neuroblast division; IMP:FlyBase.
219Q9UI46    699   DNAI1_HUMAN Dynein intermediate chain 1, axon...1320.18     38.5     23     42GO:0035085; C:cilium axoneme; IEA:UniProtKB-SubCell.::GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0030286; C:dynein complex; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.
GO:0003774; F:motor activity; TAS:ProtInc.
GO:0030030; P:cell projection organization; IEA:UniProtKB-KW.
220Q17QU5    326   LST8_BOVIN Target of rapamycin complex subuni...1350.18     38.1     25     50GO:0005737; C:cytoplasm; ISS:UniProtKB.
221Q6P2Y2    415   WDR69_XENTR Outer row dynein assembly protein...2320.31     37.4     24     41GO:0005929; C:cilium; IEA:UniProtKB-SubCell.
222Q920M5    471   CORO6_MOUSE Coronin-6 OS=Mus musculus (Mouse)...2650.19     38.1     22     39GO:0015629; C:actin cytoskeleton; IBA:RefGenome.
GO:0051015; F:actin filament binding; IBA:RefGenome.
GO:0030036; P:actin cytoskeleton organization; IBA:RefGenome.
223C7Z6H2    448   LIS1_NECH7 Nuclear distribution protein PAC1 ...920.2     38.1     34     55GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
224O62621    914   COPB2_DROME Coatomer subunit beta' OS=Drosoph...2190.2     38.5     25     42GO:0030126; C:COPI vesicle coat; NAS:UniProtKB.
GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006888; P:ER to Golgi vesicle-mediated transport; NAS:UniProtKB.::GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0010883; P:regulation of lipid storage; IDA:FlyBase.::GO:0006890; P:retrograde vesicle-mediated transport, Golgi to ER; NAS:UniProtKB.
225P97865    318   PEX7_MOUSE Peroxisomal targeting signal 2 rec...1300.91     35.8     21     39GO:0005829; C:cytosol; IDA:MGI.::GO:0005777; C:peroxisome; IEA:UniProtKB-SubCell.
GO:0001958; P:endochondral ossification; IMP:MGI.::GO:0006635; P:fatty acid beta-oxidation; IMP:MGI.::GO:0001764; P:neuron migration; IMP:MGI.::GO:0016558; P:protein import into peroxisome matrix; IMP:MGI.
226Q5FWQ6    415   WDR69_XENLA Outer row dynein assembly protein...2310.99     35.8     24     40GO:0005929; C:cilium; IEA:UniProtKB-SubCell.
227Q54IY5    1276   GEMI5_DICDI Component of gems protein 5 OS=Di...1040.21     38.5     29     52GO:0015030; C:Cajal body; IEA:UniProtKB-SubCell.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
228O22467    424   MSI1_ARATH WD-40 repeat-containing protein MS...1170.57     36.6     27     45GO:0009507; C:chloroplast; IDA:TAIR.::GO:0080008; C:CUL4 RING ubiquitin ligase complex; ISS:TAIR.::GO:0005634; C:nucleus; TAS:TAIR.
GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0008283; P:cell proliferation; IMP:TAIR.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.::GO:0009793; P:embryo development ending in seed dormancy; IMP:TAIR.::GO:0009908; P:flower development; IEA:UniProtKB-KW.::GO:0031507; P:heterochromatin assembly; IMP:TAIR.::GO:0048366; P:leaf development; IMP:TAIR.::GO:0009555; P:pollen development; IMP:TAIR.::GO:0045787; P:positive regulation of cell cycle; IGI:TAIR.::GO:0009909; P:regulation of flower development; IMP:TAIR.::GO:0006349; P:regulation of gene expression by genetic imprinting; IPI:TAIR.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0010214; P:seed coat development; IMP:TAIR.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0010026; P:trichome differentiation; IMP:TAIR.
229O35828    443   CORO7_RAT Coronin-7 OS=Rattus norvegicus (Rat...840.21     38.1     32     50GO:0016023; C:cytoplasmic membrane-bounded vesicle; IEA:UniProtKB-SubCell.::GO:0005829; C:cytosol; IEA:UniProtKB-SubCell.::GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.::GO:0000299; C:integral to membrane of membrane fraction; ISS:UniProtKB.::GO:0005625; C:soluble fraction; ISS:UniProtKB.
230Q94BM7    794   SPA4_ARATH Protein SPA1-RELATED 4 OS=Arabidop...781.1     35.8     31     50GO:0080008; C:CUL4 RING ubiquitin ligase complex; ISS:TAIR.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:InterPro.::GO:0042802; F:identical protein binding; IPI:IntAct.::GO:0004672; F:protein kinase activity; IEA:InterPro.
GO:0009585; P:red, far-red light phototransduction; IEA:UniProtKB-KW.
231P23232    341   GBB_LOLFO Guanine nucleotide-binding protein ...1450.22     37.7     28     46
GO:0004871; F:signal transducer activity; IEA:UniProtKB-KW.
232Q5XGI5    314   WDR83_XENTR WD repeat domain-containing prote...1260.22     37.7     29     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
233P49695    742   PKWA_THECU Probable serine/threonine-protein ...2270.23     38.1     23     46
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004674; F:protein serine/threonine kinase activity; IEA:UniProtKB-KW.
234Q9FKR9    472   C3H59_ARATH Zinc finger CCCH domain-containin...2330.23     38.1     25     44
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
235Q7S8R5    645   MDV1_NEUCR Mitochondrial division protein 1 O...2354     34.3     21     39GO:0005741; C:mitochondrial outer membrane; IEA:UniProtKB-SubCell.
236Q6CU59    444   YTM1_KLULA Ribosome biogenesis protein YTM1 O...1920.24     37.7     23     46GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
237Q4X0M4    1263   SEC31_ASPFU Protein transport protein sec31 O...1520.24     38.1     24     45GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0012507; C:ER to Golgi transport vesicle membrane; IEA:UniProtKB-SubCell.
GO:0015031; P:protein transport; IEA:UniProtKB-KW.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
238Q61011    340   GBB3_MOUSE Guanine nucleotide-binding protein...1680.24     37.7     26     40GO:0005834; C:heterotrimeric G-protein complex; TAS:MGI.
GO:0003924; F:GTPase activity; TAS:MGI.::GO:0004871; F:signal transducer activity; IEA:UniProtKB-KW.
GO:0007186; P:G-protein coupled receptor signaling pathway; TAS:MGI.
239A2RRU3    528   UTP15_RAT U3 small nucleolar RNA-associated p...2210.42     37.4     24     43GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
240Q8N3Y1    598   FBXW8_HUMAN F-box/WD repeat-containing protei...1500.25     37.7     24     47
GO:0005515; F:protein binding; IPI:IntAct.
241Q2GTM8    341   EIF3I_CHAGB Eukaryotic translation initiation...1150.27     37.4     28     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
records
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