Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR136C
Length:
285
Number of sequences:
5887
Description:
YLR136C TIS11 SGDID:S000004126, Chr XII from 416658-415801, Genome Release 64-1-1, reverse complement, Verified ORF, "mRNA-binding protein expressed during iron starvation; binds to a sequence element in the 3'-untranslated regions of specific mRNAs to mediate their degradation; involved in iron homeostasis"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
61Q6FXX1    226   CWC24_CANGA Pre-mRNA-splicing factor CWC24 OS...1260.077     37.4     24     44GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
62Q8CHP0    950   ZC3H3_MOUSE Zinc finger CCCH domain-containin...620.085     38.1     34     45GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006378; P:mRNA polyadenylation; ISS:UniProtKB.::GO:0016973; P:poly(A)+ mRNA export from nucleus; ISS:UniProtKB.::GO:0010793; P:regulation of mRNA export from nucleus; ISS:UniProtKB.
63Q197C6    266   VF077_IIV3 Putative zinc finger protein 034R ...1440.091     37.4     24     39
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
64Q9ERV1    416   MKRN2_MOUSE Probable E3 ubiquitin-protein lig...550.099     37.7     35     47GO:0005622; C:intracellular; ISS:UniProtKB.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
65Q2R4J4    444   C3H63_ORYSJ Zinc finger CCCH domain-containin...920.11     37.7     24     47
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
66Q9H000    416   MKRN2_HUMAN Probable E3 ubiquitin-protein lig...550.11     37.4     35     47GO:0005622; C:intracellular; IDA:UniProtKB.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
67Q9LXV4    706   C3H56_ARATH Zinc finger CCCH domain-containin...930.11     37.7     29     45GO:0005737; C:cytoplasm; IDA:TAIR.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; TAS:TAIR.
68Q8IXZ2    948   ZC3H3_HUMAN Zinc finger CCCH domain-containin...620.12     37.7     34     45GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006378; P:mRNA polyadenylation; IMP:UniProtKB.::GO:0016973; P:poly(A)+ mRNA export from nucleus; IMP:UniProtKB.::GO:0010793; P:regulation of mRNA export from nucleus; IMP:UniProtKB.
69Q4VGL6    1130   RC3H1_MOUSE Roquin OS=Mus musculus (Mouse). G...310.14     37.4     45     58GO:0000932; C:cytoplasmic mRNA processing body; IDA:BHF-UCL.::GO:0010494; C:cytoplasmic stress granule; IDA:BHF-UCL.
GO:0003730; F:mRNA 3'-UTR binding; IDA:BHF-UCL.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0033962; P:cytoplasmic mRNA processing body assembly; IMP:BHF-UCL.::GO:0046007; P:negative regulation of activated T cell proliferation; IMP:BHF-UCL.::GO:0030889; P:negative regulation of B cell proliferation; IMP:BHF-UCL.::GO:0002635; P:negative regulation of germinal center formation; IMP:BHF-UCL.::GO:0045623; P:negative regulation of T-helper cell differentiation; IMP:MGI.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; IMP:BHF-UCL.::GO:0043488; P:regulation of mRNA stability; IMP:BHF-UCL.::GO:0050856; P:regulation of T cell receptor signaling pathway; IMP:BHF-UCL.
70Q3KRC5    640   DUS3L_RAT tRNA-dihydrouridine(47) synthase [N...1060.15     37.4     26     41
GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0017150; F:tRNA dihydrouridine synthase activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
71Q5TC82    1133   RC3H1_HUMAN Roquin OS=Homo sapiens (Human). G...310.15     37.4     45     58GO:0000932; C:cytoplasmic mRNA processing body; ISS:BHF-UCL.::GO:0010494; C:cytoplasmic stress granule; ISS:BHF-UCL.
GO:0003730; F:mRNA 3'-UTR binding; ISS:BHF-UCL.::GO:0004842; F:ubiquitin-protein ligase activity; TAS:BHF-UCL.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0033962; P:cytoplasmic mRNA processing body assembly; ISS:BHF-UCL.::GO:0046007; P:negative regulation of activated T cell proliferation; ISS:BHF-UCL.::GO:0030889; P:negative regulation of B cell proliferation; ISS:BHF-UCL.::GO:0002635; P:negative regulation of germinal center formation; ISS:BHF-UCL.::GO:0045623; P:negative regulation of T-helper cell differentiation; ISS:BHF-UCL.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; ISS:BHF-UCL.::GO:0043488; P:regulation of mRNA stability; ISS:BHF-UCL.::GO:0050856; P:regulation of T cell receptor signaling pathway; ISS:BHF-UCL.
72Q28BT8    639   DUS3L_XENTR tRNA-dihydrouridine(47) synthase ...1050.16     37     31     45
GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0017150; F:tRNA dihydrouridine synthase activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
73Q6CB23    256   CWC24_YARLI Pre-mRNA-splicing factor CWC24 OS...380.17     36.6     37     58GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
74Q6NUC6    1114   RC3H1_XENLA Roquin OS=Xenopus laevis (African...310.17     37.4     45     58GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
75Q9LTS7    675   C3H65_ARATH Zinc finger CCCH domain-containin...1230.17     37     26     37
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0004518; F:nuclease activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
76Q6ZPZ3    1304   ZC3H4_MOUSE Zinc finger CCCH domain-containin...610.17     37     30     49
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
77Q2HDP2    713   DUS3_CHAGB tRNA-dihydrouridine(47) synthase [...580.18     37     38     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0017150; F:tRNA dihydrouridine synthase activity; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
78Q9UPT8    1303   ZC3H4_HUMAN Zinc finger CCCH domain-containin...610.18     37     30     49
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
79Q9XEE6    597   C3H29_ARATH Zinc finger CCCH domain-containin...1060.24     36.6     28     42GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0050832; P:defense response to fungus; IMP:TAIR.::GO:0006355; P:regulation of transcription, DNA-dependent; TAS:TAIR.::GO:0010200; P:response to chitin; IEP:TAIR.::GO:0009409; P:response to cold; IEP:TAIR.
80Q5NAW2    476   C3H6_ORYSJ Zinc finger CCCH domain-containing...670.25     36.6     31     46GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
81Q9UHC7    482   MKRN1_HUMAN E3 ubiquitin-protein ligase makor...550.25     36.6     31     47
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
82Q6FJ14    640   DUS3_CANGA tRNA-dihydrouridine(47) synthase [...490.3     36.2     37     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0017150; F:tRNA dihydrouridine synthase activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
83Q9QXP6    481   MKRN1_MOUSE E3 ubiquitin-protein ligase makor...550.31     36.2     31     47
GO:0003682; F:chromatin binding; IDA:MGI.::GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
84Q9UTH9    617   DUS3_SCHPO tRNA-dihydrouridine(47) synthase [...600.31     36.2     30     48GO:0005737; C:cytoplasm; ISS:PomBase.::GO:0005634; C:nucleus; IDA:PomBase.
GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0017150; F:tRNA dihydrouridine synthase activity; ISS:PomBase.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006400; P:tRNA modification; ISS:PomBase.
85A1CNY3    728   DUS3_ASPCL tRNA-dihydrouridine(47) synthase [...490.4     35.8     33     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0017150; F:tRNA dihydrouridine synthase activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
86Q5NAV3    466   C3H5_ORYSJ Zinc finger CCCH domain-containing...663.4     32.7     27     45GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
87Q84W91    468   C3H32_ARATH Zinc finger CCCH domain-containin...668.6     31.6     24     44GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
88Q4WRX4    726   DUS3_ASPFU tRNA-dihydrouridine(47) synthase [...980.46     35.8     28     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0017150; F:tRNA dihydrouridine synthase activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
89Q10EL1    764   C3H24_ORYSJ Zinc finger CCCH domain-containin...920.48     35.8     29     43
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
90Q2QPW2    619   C3H67_ORYSJ Zinc finger CCCH domain-containin...920.51     35.4     27     41
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
91Q94AD9    404   C3H3_ARATH Zinc finger CCCH domain-containing...770.61     35     27     44GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0004518; F:nuclease activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
records
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