Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR136C
Length:
285
Number of sequences:
5887
Description:
YLR136C TIS11 SGDID:S000004126, Chr XII from 416658-415801, Genome Release 64-1-1, reverse complement, Verified ORF, "mRNA-binding protein expressed during iron starvation; binds to a sequence element in the 3'-untranslated regions of specific mRNAs to mediate their degradation; involved in iron homeostasis"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
31Q6CWM0    665   DUS3_KLULA tRNA-dihydrouridine(47) synthase [...610.0003     45.8     34     52GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0017150; F:tRNA dihydrouridine synthase activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
32Q7F8R0    300   C3H14_ORYSJ Zinc finger CCCH domain-containin...341.5     33.9     44     50
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
33Q9LQM3    384   C3H12_ARATH Zinc finger CCCH domain-containin...530.09     37.7     36     55
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; TAS:TAIR.
34Q65X92    255   C3H37_ORYSJ Zinc finger CCCH domain-containin...810.0006     43.9     33     47
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
35Q8L7S3    809   C3H24_ARATH Zinc finger CCCH domain-containin...740.0008     44.3     31     57
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008173; F:RNA methyltransferase activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006396; P:RNA processing; IEA:InterPro.
36Q69XQ3    295   C3H44_ORYSJ Zinc finger CCCH domain-containin...281     34.3     54     68
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
37Q7XT07    685   DUS3L_ORYSJ tRNA-dihydrouridine(47) synthase ...1560.001     43.5     26     40
GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0017150; F:tRNA dihydrouridine synthase activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
38Q9C7C3    248   C3H36_ARATH Zinc finger CCCH domain-containin...283.3     32.3     50     64
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; TAS:TAIR.
39Q84WU9    596   C3H64_ARATH Zinc finger CCCH domain-containin...1360.002     43.1     28     41GO:0005829; C:cytosol; IDA:TAIR.
GO:0003824; F:catalytic activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
40P0C090    1187   RC3H2_MOUSE RING finger and CCCH-type zinc fi...580.003     42.7     38     47GO:0012505; C:endomembrane system; IEA:UniProtKB-SubCell.::GO:0016020; C:membrane; IEA:UniProtKB-KW.::GO:0048471; C:perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
41Q9FG30    240   C3H52_ARATH Zinc finger CCCH domain-containin...284.4     32     50     64
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; TAS:TAIR.
42Q7XPK1    309   C3H31_ORYSJ Zinc finger CCCH domain-containin...292.1     33.1     48     69
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
43Q96G46    650   DUS3L_HUMAN tRNA-dihydrouridine(47) synthase ...930.006     41.6     30     44
GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0017150; F:tRNA dihydrouridine synthase activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
44Q9HBD1    1191   RC3H2_HUMAN RING finger and CCCH-type zinc fi...580.006     41.6     38     47GO:0009986; C:cell surface; IDA:UniProtKB.::GO:0012505; C:endomembrane system; IEA:UniProtKB-SubCell.::GO:0016020; C:membrane; IEA:UniProtKB-KW.::GO:0005624; C:membrane fraction; IDA:UniProtKB.::GO:0048471; C:perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IDA:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
45Q84SL2    657   C3H50_ORYSJ Zinc finger CCCH domain-containin...810.007     41.6     31     46
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
46Q5VR07    279   C3H1_ORYSJ Zinc finger CCCH domain-containing...490.007     40.8     39     57
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
47Q6L4N4    402   C3H35_ORYSJ Zinc finger CCCH domain-containin...820.008     40.8     33     46
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
48O82307    315   C3H23_ARATH Zinc finger CCCH domain-containin...790.01     40.4     35     48GO:0005737; C:cytoplasm; IDA:TAIR.
GO:0003677; F:DNA binding; IDA:TAIR.::GO:0003723; F:RNA binding; IDA:TAIR.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; TAS:TAIR.
49Q94JI5    225   C3H10_ORYSJ Zinc finger CCCH domain-containin...620.01     40     34     50
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
50Q9FU27    386   C3H2_ORYSJ Zinc finger CCCH domain-containing...820.011     40.4     33     46GO:0005634; C:nucleus; IDA:Gramene.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IC:Gramene.
GO:0009867; P:jasmonic acid mediated signaling pathway; IMP:Gramene.::GO:0010150; P:leaf senescence; IMP:Gramene.
51Q9FKW2    381   C3H61_ARATH Zinc finger CCCH domain-containin...600.014     40     32     53
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
52Q69NK8    613   C3H59_ORYSJ Zinc finger CCCH domain-containin...358.8     31.6     37     54
GO:0003824; F:catalytic activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
53Q0DBW8    279   C3H42_ORYSJ Zinc finger CCCH domain-containin...1140.017     39.7     26     43
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
54Q9M0G2    356   C3H49_ARATH Zinc finger CCCH domain-containin...820.018     39.7     33     48
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IDA:TAIR.
55Q91XI1    637   DUS3L_MOUSE tRNA-dihydrouridine(47) synthase ...1060.021     40     27     42
GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0017150; F:tRNA dihydrouridine synthase activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
56A7TQ73    664   DUS3_VANPO tRNA-dihydrouridine(47) synthase [...670.026     39.7     37     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0017150; F:tRNA dihydrouridine synthase activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
57Q9ZWA1    393   C3H2_ARATH Zinc finger CCCH domain-containing...600.032     38.9     32     50GO:0005634; C:nucleus; IDA:TAIR.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0010187; P:negative regulation of seed germination; IMP:TAIR.::GO:0006355; P:regulation of transcription, DNA-dependent; TAS:TAIR.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
58O82199    359   C3H20_ARATH Zinc finger CCCH domain-containin...770.039     38.9     34     49GO:0005886; C:plasma membrane; IDA:TAIR.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; TAS:TAIR.::GO:0006979; P:response to oxidative stress; IMP:TAIR.
59Q5RJC5    435   C3H67_ARATH Zinc finger CCCH domain-containin...744.4     32.3     30     41GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
60P41000    583   CPS3_SCHPO Protein cps3 OS=Schizosaccharomyce...880.043     38.9     31     48GO:0005829; C:cytosol; IDA:PomBase.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0007126; P:meiosis; IEA:UniProtKB-KW.::GO:0000226; P:microtubule cytoskeleton organization; IMP:PomBase.::GO:0007346; P:regulation of mitotic cell cycle; IMP:PomBase.
61Q6FXX1    226   CWC24_CANGA Pre-mRNA-splicing factor CWC24 OS...1260.077     37.4     24     44GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
records
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