Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
Home About FGC Use Cases Species List

UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR117C
Length:
687
Number of sequences:
5887
Description:
YLR117C CLF1 SGDID:S000004107, Chr XII from 384534-382471, Genome Release 64-1-1, reverse complement, Verified ORF, "Member of the NineTeen Complex (NTC) that contains Prp19p and stabilizes U6 snRNA in catalytic forms of the spliceosome containing U2, U5, and U6 snRNAs; homolog of Drosophila crooked neck protein; interacts with U1 snRNP proteins"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
61Q8DCT7    228   GPH_VIBVU Phosphoglycolate phosphatase OS=Vib...1090.16     38.1     27     48
GO:0008967; F:phosphoglycolate phosphatase activity; IEA:EC.
GO:0005975; P:carbohydrate metabolic process; IEA:UniProtKB-KW.
62P14922    966   CYC8_YEAST General transcriptional corepresso...1830.28     38.1     22     38GO:0017053; C:transcriptional repressor complex; IDA:SGD.
GO:0042826; F:histone deacetylase binding; IDA:SGD.::GO:0001191; F:RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription; IDA:SGD.::GO:0001190; F:RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription; IDA:SGD.
GO:0035955; P:negative regulation of dipeptide transport by negative regulation of transcription from RNA polymerase II promoter; IMP:SGD.::GO:0007070; P:negative regulation of transcription from RNA polymerase II promoter during mitosis; IMP:SGD.::GO:0016584; P:nucleosome positioning; IDA:SGD.::GO:2000531; P:regulation of fatty acid biosynthetic process by regulation of transcription from RNA polymerase II promoter; IMP:SGD.::GO:2001020; P:regulation of response to DNA damage stimulus; IMP:SGD.::GO:0061392; P:regulation of transcription from RNA polymerase II promoter in response to osmotic stress; IMP:SGD.
63Q7MH14    228   GPH_VIBVY Phosphoglycolate phosphatase OS=Vib...1090.45     36.6     28     49
GO:0008967; F:phosphoglycolate phosphatase activity; IEA:EC.
GO:0005975; P:carbohydrate metabolic process; IEA:UniProtKB-KW.
64Q6BQ23    850   SYF1_DEBHA Pre-mRNA-splicing factor SYF1 OS=0...1000.56     37.4     29     48GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
65Q54NS3    263   Y5095_DICDI TPR repeat-containing protein DDB...1020.62     36.6     26     42
GO:0005488; F:binding; IEA:InterPro.
66Q2UKV8    1078   RNA14_ASPOR mRNA 3'-end-processing protein rn...760.85     36.6     34     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
67Q5RDW9    717   CSTF3_PONAB Cleavage stimulation factor subun...1030.95     36.6     31     45GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
68Q12996    717   CSTF3_HUMAN Cleavage stimulation factor subun...1031     36.2     31     45GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0003723; F:RNA binding; TAS:ProtInc.
GO:0006379; P:mRNA cleavage; TAS:ProtInc.::GO:0006378; P:mRNA polyadenylation; TAS:ProtInc.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
69Q99LI7    717   CSTF3_MOUSE Cleavage stimulation factor subun...1031.1     36.2     31     45GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
70P19735    899   PRP6_YEAST Pre-mRNA-splicing factor 6 OS=Sacc...1061.1     36.2     25     49GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.
71Q5AM44    791   RNA14_CANAL mRNA 3'-end-processing protein RN...1731.1     36.2     19     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
72Q0PDK7    1032   GP18_BPSPP Tail tape measure protein gp18 OS=...681.2     36.2     31     50GO:0019012; C:virion; IEA:UniProtKB-SubCell.
73Q8K2Z2    665   PRP39_MOUSE Pre-mRNA-processing factor 39 OS=...3821.7     35.4     20     37GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
74O74970    612   PRP39_SCHPO Pre-mRNA-processing factor 39 OS=...1151.8     35.4     23     47GO:0000243; C:commitment complex; ISS:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; ISS:PomBase.
75Q4PCV8    945   RNA14_USTMA mRNA 3'-end-processing protein RN...946.5     33.9     20     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
76Q9NW81    257   AT5SL_HUMAN ATP synthase subunit s-like prote...451.7     35     38     56
77Q9D7K5    258   AT5SL_MOUSE ATP synthase subunit s-like prote...572.3     34.7     32     54GO:0005739; C:mitochondrion; IDA:MGI.
78Q4R5F9    256   AT5SL_MACFA ATP synthase subunit s-like prote...572.9     34.3     32     51
79Q4IR09    997   RNA14_GIBZE mRNA 3'-end-processing protein RN...806.5     33.9     25     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
80O60188    488   UTP6_SCHPO U3 small nucleolar RNA-associated ...1507.4     33.5     23     39GO:0032153; C:cell division site; IDA:PomBase.::GO:0005829; C:cytosol; IDA:PomBase.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:PomBase.::GO:0032040; C:small-subunit processome; ISS:PomBase.::GO:0005816; C:spindle pole body; IDA:PomBase.
GO:0030515; F:snoRNA binding; ISS:PomBase.
GO:0030490; P:maturation of SSU-rRNA; ISS:PomBase.
81Q02354    440   UTP6_YEAST U3 small nucleolar RNA-associated ...1687.8     33.1     22     43GO:0034388; C:Pwp2p-containing subcomplex of 90S preribosome; IDA:SGD.::GO:0032040; C:small-subunit processome; IDA:SGD.
GO:0030515; F:snoRNA binding; IPI:SGD.
GO:0000480; P:endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000447; P:endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000472; P:endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.
records
Previous ‹‹ ›› Next Total records: 81 61 - 81
Elimate unknown annotation:
Filter for keyword on hit description:
Select upper E value:
Select lower bit score:
Select lower %idenity value:
Select lower %positive value:
Taxonomic division:
Lower limit on hit length:
Lower limit on alignment length::