Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR117C
Length:
687
Number of sequences:
5887
Description:
YLR117C CLF1 SGDID:S000004107, Chr XII from 384534-382471, Genome Release 64-1-1, reverse complement, Verified ORF, "Member of the NineTeen Complex (NTC) that contains Prp19p and stabilizes U6 snRNA in catalytic forms of the spliceosome containing U2, U5, and U6 snRNAs; homolog of Drosophila crooked neck protein; interacts with U1 snRNP proteins"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
31Q54Z08    850   SYF1_DICDI Pre-mRNA-splicing factor SYF1 OS=D...1553.5     34.7     24     41GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
32Q52DF3    832   SYF1_MAGO7 Pre-mRNA-splicing factor SYF1 OS=b...1447.5     33.5     24     42GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
33Q9JLI8    962   SART3_MOUSE Squamous cell carcinoma antigen r...940.0005     47     35     55GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006396; P:RNA processing; IEA:InterPro.
34Q7S1Y0    1167   RNA14_NEUCR mRNA 3'-end-processing protein rn...471.7     35.8     32     57GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
35Q9FNS4    662   MBB1_CHLRE PsbB mRNA maturation factor Mbb1, ...1530.5     37.4     20     42GO:0009570; C:chloroplast stroma; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
36Q05022    1729   RRP5_YEAST rRNA biogenesis protein RRP5 OS=Sa...1884.6     34.3     22     42GO:0030686; C:90S preribosome; IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0032040; C:small-subunit processome; IDA:SGD.
GO:0008266; F:poly(U) RNA binding; IDA:SGD.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0000480; P:endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000447; P:endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000464; P:endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000472; P:endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.
37O74835    1690   RRP5_SCHPO rRNA biogenesis protein rrp5 OS=Sc...973.4     34.7     25     45GO:0005730; C:nucleolus; IDA:PomBase.::GO:0032040; C:small-subunit processome; ISS:PomBase.
GO:0042134; F:rRNA primary transcript binding; ISS:PomBase.::GO:0030515; F:snoRNA binding; ISS:PomBase.
GO:0006397; P:mRNA processing; IEA:InterPro.::GO:0006364; P:rRNA processing; ISS:PomBase.
38P39682    629   PRP39_YEAST Pre-mRNA-processing factor 39 OS=...1430.003     44.7     24     43GO:0000243; C:commitment complex; IGI:SGD.::GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; IGI:SGD.
39Q7SAK5    829   SYF1_NEUCR Pre-mRNA-splicing factor syf-1 OS=...1399     33.1     25     40GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
40O94906    941   PRP6_HUMAN Pre-mRNA-processing factor 6 OS=Ho...1453.4     34.7     22     41GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0071001; C:U4/U6 snRNP; IDA:BHF-UCL.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:BHF-UCL.::GO:0005682; C:U5 snRNP; IDA:BHF-UCL.
GO:0050681; F:androgen receptor binding; IPI:MGI.::GO:0043021; F:ribonucleoprotein complex binding; IDA:BHF-UCL.::GO:0003713; F:transcription coactivator activity; IGI:MGI.
GO:0000244; P:assembly of spliceosomal tri-snRNP; IMP:BHF-UCL.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:MGI.::GO:0000245; P:spliceosomal complex assembly; NAS:UniProtKB.
41A1A5S1    941   PRP6_RAT Pre-mRNA-processing factor 6 OS=Ratt...1126.8     33.9     24     39GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.
42Q2KJJ0    941   PRP6_BOVIN Pre-mRNA-processing factor 6 OS=Bo...1452     35.4     22     43GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.
43A7MB10    1874   RRP5_BOVIN Protein RRP5 homolog OS=Bos taurus...710.21     38.9     34     49GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:InterPro.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
44Q91YR7    941   PRP6_MOUSE Pre-mRNA-processing factor 6 OS=Mu...1480.98     36.6     22     39GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.
45Q6NS46    1862   RRP5_MOUSE Protein RRP5 homolog OS=Mus muscul...720.33     38.1     31     50GO:0005829; C:cytosol; IDA:MGI.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:InterPro.
GO:0006915; P:apoptotic process; TAS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:InterPro.::GO:0043123; P:positive regulation of I-kappaB kinase/NF-kappaB cascade; TAS:UniProtKB.::GO:0006355; P:regulation of transcription, DNA-dependent; TAS:UniProtKB.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
46Q7KRW8    1066   PRP39_DROME Pre-mRNA-processing factor 39 OS=...1402.6     35     24     42GO:0005685; C:U1 snRNP; ISS:FlyBase.
GO:0031072; F:heat shock protein binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:FlyBase.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IMP:FlyBase.
47Q14690    1871   RRP5_HUMAN Protein RRP5 homolog OS=Homo sapie...1941.8     35.8     19     43GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:InterPro.::GO:0008134; F:transcription factor binding; IPI:UniProtKB.
GO:0006397; P:mRNA processing; IEA:InterPro.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
48Q5RCC2    941   PRP6_PONAB Pre-mRNA-processing factor 6 OS=Po...1437.2     33.5     21     38GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.
49Q12381    906   PRP1_SCHPO Pre-mRNA-splicing factor prp1 OS=S...4852.9     35     21     37GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.
GO:0005488; F:binding; IEA:InterPro.
GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; IMP:PomBase.
50Q86UA1    669   PRP39_HUMAN Pre-mRNA-processing factor 39 OS=...4270.06     40.4     19     36GO:0005634; C:nucleus; IDA:HPA.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
51Q1JPZ7    752   PRP39_DANRE Pre-mRNA-processing factor 39 OS=...1430.034     41.2     27     42GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
52Q4P7S1    1081   SYF1_USTMA Pre-mRNA-splicing factor SYF1 OS=U...1071.3     36.2     27     45GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
53P0CO08    1031   SYF1_CRYNJ Pre-mRNA-splicing factor SYF1 OS=A...730.21     38.5     30     59GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
54P0CO09    1031   SYF1_CRYNB Pre-mRNA-splicing factor SYF1 OS=(...730.21     38.5     30     59GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
55Q9LEM8    1385   NAC2_CHLRE PsbD mRNA maturation factor Nac2, ...1340.049     40.8     25     45GO:0009570; C:chloroplast stroma; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
56Q5B3I8    1075   RNA14_EMENI mRNA 3'-end-processing protein rn...960.31     38.1     30     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
57Q4KLU2    641   PRP39_XENLA Pre-mRNA-processing factor 39 OS=...1211.6     35.8     22     41GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
58Q6CAR6    736   SYF1_YARLI Pre-mRNA-splicing factor SYF1 OS=l...1430.79     36.6     26     41GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
59Q6C8L8    806   RNA14_YARLI mRNA 3'-end-processing protein RN...989.4     33.1     20     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
60Q4WXX4    1029   RNA14_ASPFU mRNA 3'-end-processing protein rn...830.83     36.6     23     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
61Q8DCT7    228   GPH_VIBVU Phosphoglycolate phosphatase OS=Vib...1090.16     38.1     27     48
GO:0008967; F:phosphoglycolate phosphatase activity; IEA:EC.
GO:0005975; P:carbohydrate metabolic process; IEA:UniProtKB-KW.
records
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