Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR116W
Length:
476
Number of sequences:
5887
Description:
YLR116W MSL5 SGDID:S000004106, Chr XII from 380822-382252, Genome Release 64-1-1, Verified ORF, "Component of the commitment complex, which defines the first step in the splicing pathway; essential protein that interacts with Mud2p and Prp40p, forming a bridge between the intron ends; also involved in nuclear retention of pre-mRNA"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
91Q7NGM0    713   PNP_GLOVI Polyribonucleotide nucleotidyltrans...341.6     35     35     74GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
92Q82851    1432   POL_JEMBR Gag-Pol polyprotein OS=Jembrana dis...451.6     35     38     49GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
GO:0004190; F:aspartic-type endopeptidase activity; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.::GO:0004533; F:exoribonuclease H activity; IEA:EC.::GO:0004523; F:ribonuclease H activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003964; F:RNA-directed DNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0015074; P:DNA integration; IEA:UniProtKB-KW.::GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006508; P:proteolysis; IEA:UniProtKB-KW.::GO:0006278; P:RNA-dependent DNA replication; IEA:InterPro.::GO:0046797; P:viral procapsid maturation; IEA:UniProtKB-KW.
93P16900    446   GAG_OMVVS Gag polyprotein OS=lentivirus). GN=...401.7     34.7     38     45GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0044419; P:interspecies interaction between organisms; IEA:UniProtKB-KW.::GO:0016032; P:viral reproduction; IEA:InterPro.
94B8HG67    752   PNP_ARTCA Polyribonucleotide nucleotidyltrans...981.7     35     26     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
95B1VXZ6    737   PNP_STRGG Polyribonucleotide nucleotidyltrans...481.8     35     33     58GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
96Q92945    711   FUBP2_HUMAN Far upstream element-binding prot...1181.8     35     25     42GO:0005829; C:cytosol; TAS:Reactome.::GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; TAS:ProtInc.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0000375; P:RNA splicing, via transesterification reactions; TAS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
97A9WPX4    746   PNP_RENSM Polyribonucleotide nucleotidyltrans...601.9     34.7     32     57GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
98A0JUV8    746   PNP_ARTS2 Polyribonucleotide nucleotidyltrans...601.9     34.7     32     57GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
99A4X4P8    785   PNP_SALTO Polyribonucleotide nucleotidyltrans...471.9     34.7     30     64GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
100Q99PF5    721   FUBP2_RAT Far upstream element-binding protei...1181.9     34.7     25     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0030425; C:dendrite; IDA:RGD.::GO:0043025; C:neuronal cell body; IDA:RGD.::GO:0005634; C:nucleus; IDA:RGD.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003730; F:mRNA 3'-UTR binding; IDA:RGD.::GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
101A1R525    750   PNP_ARTAT Polyribonucleotide nucleotidyltrans...602.1     34.7     32     57GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
102Q12476    344   AIR2_YEAST Protein AIR2 OS=Saccharomyces cere...1442.2     34.3     25     38GO:0005730; C:nucleolus; IDA:SGD.::GO:0031499; C:TRAMP complex; IDA:SGD.
GO:0030674; F:protein binding, bridging; IMP:SGD.::GO:0003723; F:RNA binding; IDA:SGD.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0043629; P:ncRNA polyadenylation; IDA:SGD.::GO:0071039; P:nuclear polyadenylation-dependent CUT catabolic process; IGI:SGD.::GO:0071035; P:nuclear polyadenylation-dependent rRNA catabolic process; IGI:SGD.::GO:0071036; P:nuclear polyadenylation-dependent snoRNA catabolic process; IGI:SGD.::GO:0071037; P:nuclear polyadenylation-dependent snRNA catabolic process; IGI:SGD.::GO:0071038; P:nuclear polyadenylation-dependent tRNA catabolic process; IDA:SGD.::GO:0006400; P:tRNA modification; IMP:SGD.
103Q6A7P6    733   PNP_PROAC Polyribonucleotide nucleotidyltrans...512.3     34.7     29     61GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
104Q8CJQ6    739   PNP_STRCO Polyribonucleotide nucleotidyltrans...832.4     34.7     25     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
105Q3U0V1    748   FUBP2_MOUSE Far upstream element-binding prot...1352.5     34.3     24     43GO:0005829; C:cytosol; TAS:Reactome.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
106Q32SG5    616   RIK_MAIZE Protein RIK OS=Zea mays (Maize). GN...1492.5     34.3     17     39GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
107B2J2V3    718   PNP_NOSP7 Polyribonucleotide nucleotidyltrans...352.6     34.3     37     69GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
108A8M758    786   PNP_SALAI Polyribonucleotide nucleotidyltrans...472.7     34.3     30     64GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
109B3DZ86    707   PNP_METI4 Polyribonucleotide nucleotidyltrans...393     34.3     36     67GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
110A0LV20    782   PNP_ACIC1 Polyribonucleotide nucleotidyltrans...423.1     34.3     33     64GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
111Q6ZR62    310   ZCH16_HUMAN Zinc finger CCHC domain-containin...353.2     33.5     43     57
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
112Q8VYA5    290   RSZ33_ARATH Serine/arginine-rich splicing fac...493.4     33.5     33     47GO:0016607; C:nuclear speck; IDA:TAIR.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0000245; P:spliceosomal complex assembly; TAS:TAIR.
113A1SLJ4    742   PNP_NOCSJ Polyribonucleotide nucleotidyltrans...573.7     33.9     28     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
114Q6ZRI0    2925   OTOG_HUMAN Otogelin OS=Homo sapiens (Human). ...933.9     33.9     29     40GO:0016324; C:apical plasma membrane; IEA:UniProtKB-SubCell.::GO:0005615; C:extracellular space; IEA:UniProtKB-SubCell.
GO:0046556; F:alpha-N-arabinofuranosidase activity; IEA:InterPro.
GO:0046373; P:L-arabinose metabolic process; IEA:InterPro.
115B0RGW7    757   PNP_CLAMS Polyribonucleotide nucleotidyltrans...454.2     33.9     36     62GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
116P72659    718   PNP_SYNY3 Polyribonucleotide nucleotidyltrans...414.2     33.5     37     66GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
117A5CSN9    757   PNP_CLAM3 Polyribonucleotide nucleotidyltrans...454.2     33.9     36     62GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
118Q38896    201   GRP2B_ARATH Glycine-rich protein 2b OS=Arabid...224.5     32.7     50     68GO:0005829; C:cytosol; IDA:TAIR.::GO:0005634; C:nucleus; IDA:TAIR.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0009790; P:embryo development; IMP:TAIR.::GO:0010154; P:fruit development; IMP:TAIR.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.
119A6W815    746   PNP_KINRD Polyribonucleotide nucleotidyltrans...1184.6     33.5     23     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
120Q8N3D4    1523   EH1L1_HUMAN EH domain-binding protein 1-like ...895     33.5     31     40
121Q3M7Z9    718   PNP_ANAVT Polyribonucleotide nucleotidyltrans...335.1     33.5     36     70GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
records
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