Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR116W
Length:
476
Number of sequences:
5887
Description:
YLR116W MSL5 SGDID:S000004106, Chr XII from 380822-382252, Genome Release 64-1-1, Verified ORF, "Component of the commitment complex, which defines the first step in the splicing pathway; essential protein that interacts with Mud2p and Prp40p, forming a bridge between the intron ends; also involved in nuclear retention of pre-mRNA"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
61Q9CPN8    579   IF2B3_MOUSE Insulin-like growth factor 2 mRNA...430.17     38.1     42     65GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
62B2RX14    1644   TUT4_MOUSE Terminal uridylyltransferase 4 OS=...880.19     38.1     28     43GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005634; C:nucleus; IDA:MGI.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:MGI.::GO:0050265; F:RNA uridylyltransferase activity; IDA:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0001816; P:cytokine production; IDA:MGI.::GO:0070102; P:interleukin-6-mediated signaling pathway; IMP:UniProtKB.::GO:0010587; P:miRNA catabolic process; ISS:UniProtKB.::GO:0032088; P:negative regulation of NF-kappaB transcription factor activity; IDA:MGI.::GO:0032755; P:positive regulation of interleukin-6 production; IMP:UniProtKB.::GO:0031054; P:pre-miRNA processing; ISS:UniProtKB.::GO:0031664; P:regulation of lipopolysaccharide-mediated signaling pathway; IDA:MGI.::GO:0031123; P:RNA 3'-end processing; IDA:UniProtKB.::GO:0019827; P:stem cell maintenance; ISS:UniProtKB.
63P57024    193   LOLB_NEIMB Outer-membrane lipoprotein LolB OS...970.19     37     27     49GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell.::GO:0005886; C:plasma membrane; IEA:UniProtKB-KW.
GO:0015031; P:protein transport; IEA:UniProtKB-KW.
64Q9PW80    582   IF2B3_DANRE Insulin-like growth factor 2 mRNA...360.21     37.7     44     67GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
65P36627    179   BYR3_SCHPO Cellular nucleic acid-binding prot...510.22     36.6     37     53GO:0005829; C:cytosol; IDA:PomBase.::GO:0005730; C:nucleolus; IDA:PomBase.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0000747; P:conjugation with cellular fusion; IMP:PomBase.::GO:0031137; P:regulation of conjugation with cellular fusion; IGI:PomBase.
66Q08CK7    598   IF2B1_DANRE Insulin-like growth factor 2 mRNA...460.22     37.7     39     63GO:0070937; C:CRD-mediated mRNA stability complex; ISS:UniProtKB.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
67P23424    442   GAG_VILV1 Gag polyprotein OS=lentivirus). GN=...490.26     37.4     35     45GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0044419; P:interspecies interaction between organisms; IEA:UniProtKB-KW.::GO:0016032; P:viral reproduction; IEA:InterPro.
68P53849    153   GIS2_YEAST Zinc finger protein GIS2 OS=Saccha...560.26     36.2     43     46GO:0042788; C:polysomal ribosome; IPI:SGD.
GO:0003729; F:mRNA binding; IDA:SGD.::GO:0003697; F:single-stranded DNA binding; IDA:SGD.::GO:0045182; F:translation regulator activity; IDA:SGD.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0045727; P:positive regulation of translation; IDA:SGD.
69P35955    442   GAG_VILVK Gag polyprotein OS=Maedi visna viru...490.27     37.4     35     45GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0044419; P:interspecies interaction between organisms; IEA:UniProtKB-KW.::GO:0016032; P:viral reproduction; IEA:InterPro.
70P23425    442   GAG_VILV2 Gag polyprotein OS=lentivirus). GN=...490.27     37.4     35     45GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0044419; P:interspecies interaction between organisms; IEA:UniProtKB-KW.::GO:0016032; P:viral reproduction; IEA:InterPro.
71P03352    442   GAG_VILV Gag polyprotein OS=Maedi visna virus...490.27     37.4     35     45GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0044419; P:interspecies interaction between organisms; IEA:UniProtKB-KW.::GO:0016032; P:viral reproduction; IEA:InterPro.
72O88477    577   IF2B1_MOUSE Insulin-like growth factor 2 mRNA...460.31     37.4     39     61GO:0070937; C:CRD-mediated mRNA stability complex; ISS:UniProtKB.::GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0010610; P:regulation of mRNA stability involved in response to stress; ISS:UniProtKB.
73Q9NZI8    577   IF2B1_HUMAN Insulin-like growth factor 2 mRNA...460.31     37.4     39     61GO:0070937; C:CRD-mediated mRNA stability complex; IDA:UniProtKB.::GO:0010494; C:cytoplasmic stress granule; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0043197; C:dendritic spine; IEA:UniProtKB-SubCell.::GO:0030027; C:lamellipodium; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IDA:HPA.::GO:0005886; C:plasma membrane; IDA:HPA.
GO:0003730; F:mRNA 3'-UTR binding; IDA:UniProtKB.::GO:0048027; F:mRNA 5'-UTR binding; IDA:BHF-UCL.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0045182; F:translation regulator activity; IDA:BHF-UCL.
GO:0070934; P:CRD-mediated mRNA stabilization; IDA:UniProtKB.::GO:0017148; P:negative regulation of translation; IDA:BHF-UCL.::GO:0042035; P:regulation of cytokine biosynthetic process; IC:BHF-UCL.::GO:0010610; P:regulation of mRNA stability involved in response to stress; IMP:UniProtKB.
74Q8CGX0    577   IF2B1_RAT Insulin-like growth factor 2 mRNA-b...460.32     37.4     39     61GO:0070937; C:CRD-mediated mRNA stability complex; ISS:UniProtKB.::GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.::GO:0043197; C:dendritic spine; IEA:UniProtKB-SubCell.::GO:0030027; C:lamellipodium; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0010610; P:regulation of mRNA stability involved in response to stress; ISS:UniProtKB.::GO:0006403; P:RNA localization; IMP:RGD.
75O42254    576   IF2B1_CHICK Insulin-like growth factor 2 mRNA...460.34     37     39     61GO:0070937; C:CRD-mediated mRNA stability complex; ISS:UniProtKB.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
76P57023    193   LOLB_NEIMA Outer-membrane lipoprotein LolB OS...970.38     36.2     27     49GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell.::GO:0005886; C:plasma membrane; IEA:UniProtKB-KW.
GO:0015031; P:protein transport; IEA:UniProtKB-KW.
77A1A008    892   PNP_BIFAA Polyribonucleotide nucleotidyltrans...530.44     37     34     62GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
78B8DVV8    873   PNP_BIFA0 Polyribonucleotide nucleotidyltrans...530.57     36.6     34     62GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
79P40507    360   AIR1_YEAST Protein AIR1 OS=Saccharomyces cere...1030.61     36.2     26     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0031499; C:TRAMP complex; IDA:SGD.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0043629; P:ncRNA polyadenylation; IDA:SGD.::GO:0071039; P:nuclear polyadenylation-dependent CUT catabolic process; IGI:SGD.::GO:0071035; P:nuclear polyadenylation-dependent rRNA catabolic process; IGI:SGD.::GO:0071036; P:nuclear polyadenylation-dependent snoRNA catabolic process; IGI:SGD.::GO:0071037; P:nuclear polyadenylation-dependent snRNA catabolic process; IGI:SGD.::GO:0071038; P:nuclear polyadenylation-dependent tRNA catabolic process; IDA:SGD.
80Q82850    436   GAG_JEMBR Gag polyprotein OS=Jembrana disease...480.67     36.2     40     48GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
GO:0003676; F:nucleic acid binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0044419; P:interspecies interaction between organisms; IEA:UniProtKB-KW.::GO:0046797; P:viral procapsid maturation; IEA:UniProtKB-KW.
81Q9UEW3    520   MARCO_HUMAN Macrophage receptor MARCO OS=Homo...870.68     36.2     32     44GO:0005581; C:collagen; IEA:UniProtKB-KW.::GO:0005887; C:integral to plasma membrane; TAS:ProtInc.
GO:0008329; F:pattern recognition receptor activity; TAS:ProtInc.::GO:0005044; F:scavenger receptor activity; IEA:InterPro.::GO:0004888; F:transmembrane signaling receptor activity; TAS:ProtInc.
GO:0007166; P:cell surface receptor signaling pathway; TAS:ProtInc.::GO:0045087; P:innate immune response; IEA:UniProtKB-KW.
82Q8N567    271   ZCHC9_HUMAN Zinc finger CCHC domain-containin...570.76     35.4     37     47
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0010923; P:negative regulation of phosphatase activity; IDA:UniProtKB.
83Q1LUA6    3028   TRIO_DANRE Triple functional domain protein O...1260.77     36.2     27     38GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0005543; F:phospholipid binding; IEA:InterPro.::GO:0004674; F:protein serine/threonine kinase activity; IEA:UniProtKB-KW.::GO:0005089; F:Rho guanyl-nucleotide exchange factor activity; IEA:InterPro.
GO:0035023; P:regulation of Rho protein signal transduction; IEA:InterPro.
84P19558    476   GAG_BIV29 Gag polyprotein OS=immunodeficiency...530.86     35.8     34     49GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
GO:0003676; F:nucleic acid binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0044419; P:interspecies interaction between organisms; IEA:UniProtKB-KW.::GO:0046797; P:viral procapsid maturation; IEA:UniProtKB-KW.
85Q8G447    913   PNP_BIFLO Polyribonucleotide nucleotidyltrans...451     35.8     36     64GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
86B3DPX0    913   PNP_BIFLD Polyribonucleotide nucleotidyltrans...451     35.8     36     64GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
87Q5TAX3    1644   TUT4_HUMAN Terminal uridylyltransferase 4 OS=...2151     35.8     23     36GO:0005737; C:cytoplasm; IDA:UniProtKB.::GO:0005730; C:nucleolus; IDA:HPA.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0050265; F:RNA uridylyltransferase activity; IDA:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0010587; P:miRNA catabolic process; IMP:UniProtKB.::GO:0031054; P:pre-miRNA processing; IMP:UniProtKB.::GO:0031123; P:RNA 3'-end processing; IDA:UniProtKB.::GO:0019827; P:stem cell maintenance; IMP:UniProtKB.
88P19560    1475   POL_BIV29 Gag-Pol polyprotein OS=immunodefici...521.2     35.4     33     50GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
GO:0004190; F:aspartic-type endopeptidase activity; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.::GO:0004533; F:exoribonuclease H activity; IEA:EC.::GO:0004523; F:ribonuclease H activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003964; F:RNA-directed DNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0015074; P:DNA integration; IEA:UniProtKB-KW.::GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0044419; P:interspecies interaction between organisms; IEA:UniProtKB-KW.::GO:0006508; P:proteolysis; IEA:UniProtKB-KW.::GO:0006278; P:RNA-dependent DNA replication; IEA:InterPro.::GO:0046797; P:viral procapsid maturation; IEA:UniProtKB-KW.
89Q82K80    738   PNP_STRAW Polyribonucleotide nucleotidyltrans...831.2     35.4     25     52GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
90B7GNH2    914   PNP_BIFLS Polyribonucleotide nucleotidyltrans...441.4     35.4     36     64GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
91Q7NGM0    713   PNP_GLOVI Polyribonucleotide nucleotidyltrans...341.6     35     35     74GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
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