Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR116W
Length:
476
Number of sequences:
5887
Description:
YLR116W MSL5 SGDID:S000004106, Chr XII from 380822-382252, Genome Release 64-1-1, Verified ORF, "Component of the commitment complex, which defines the first step in the splicing pathway; essential protein that interacts with Mud2p and Prp40p, forming a bridge between the intron ends; also involved in nuclear retention of pre-mRNA"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
31Q75GR5    281   SPIN1_ORYSJ KH domain-containing protein SPIN...1211e-20     95.1     44     60GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0003677; F:DNA binding; IDA:UniProtKB.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IDA:UniProtKB.
GO:0009908; P:flower development; IEA:UniProtKB-KW.::GO:0048579; P:negative regulation of long-day photoperiodism, flowering; IMP:UniProtKB.::GO:0048577; P:negative regulation of short-day photoperiodism, flowering; IMP:UniProtKB.
32Q9FKT4    315   QKIL2_ARATH KH domain-containing protein At5g...1242e-20     95.5     42     63GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
33Q0WLR1    308   QKIL1_ARATH KH domain-containing protein At4g...1245e-20     94     41     64GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
34Q8GYR4    283   QKIL4_ARATH KH domain-containing protein At3g...1349e-20     92.8     42     60GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
35Q8GWR3    298   QKIL5_ARATH KH domain-containing protein At1g...1221e-19     92.8     43     65GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
36Q9ZVI3    286   QKIL3_ARATH KH domain-containing protein At2g...2196e-18     87.8     33     50GO:0005829; C:cytosol; IDA:TAIR.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
37Q5VWX1    349   KHDR2_HUMAN KH domain-containing, RNA-binding...1280.000000000000009     79     32     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0017124; F:SH3 domain binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
38Q920F3    349   KHDR2_RAT KH domain-containing, RNA-binding, ...1280.00000000000001     78.6     32     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0017124; F:SH3 domain binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
39Q9WU01    349   KHDR2_MOUSE KH domain-containing, RNA-binding...1280.00000000000001     78.6     32     57GO:0005634; C:nucleus; TAS:MGI.
GO:0008143; F:poly(A) RNA binding; IDA:MGI.::GO:0008266; F:poly(U) RNA binding; IDA:MGI.::GO:0046982; F:protein heterodimerization activity; IDA:MGI.::GO:0042169; F:SH2 domain binding; IDA:MGI.::GO:0017124; F:SH3 domain binding; IDA:MGI.::GO:0005070; F:SH3/SH2 adaptor activity; TAS:MGI.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
40Q0VFL3    345   KHDR2_XENTR KH domain-containing, RNA-binding...1280.00000000000007     76.3     31     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
41Q08BJ2    346   KHDR2_DANRE KH domain-containing, RNA-binding...1280.00000000000009     75.9     30     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
42Q9R226    346   KHDR3_MOUSE KH domain-containing, RNA-binding...1390.0000000000002     74.7     32     54GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0017124; F:SH3 domain binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
43O75525    346   KHDR3_HUMAN KH domain-containing, RNA-binding...1390.0000000000003     74.3     32     54GO:0005634; C:nucleus; IDA:HPA.
GO:0017124; F:SH3 domain binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0007283; P:spermatogenesis; TAS:ProtInc.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
44Q9JLP1    346   KHDR3_RAT KH domain-containing, RNA-binding, ...1390.0000000000004     73.9     32     54GO:0005634; C:nucleus; IDA:RGD.
GO:0017124; F:SH3 domain binding; IEA:UniProtKB-KW.::GO:0003727; F:single-stranded RNA binding; IDA:RGD.
GO:0006397; P:mRNA processing; IDA:RGD.::GO:0033120; P:positive regulation of RNA splicing; IMP:RGD.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
45Q60749    443   KHDR1_MOUSE KH domain-containing, RNA-binding...1270.000000000006     70.9     31     53GO:0016020; C:membrane; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0003723; F:RNA binding; IDA:UniProtKB.::GO:0017124; F:SH3 domain binding; IEA:UniProtKB-KW.::GO:0005070; F:SH3/SH2 adaptor activity; IPI:UniProtKB.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0007166; P:cell surface receptor signaling pathway; IDA:UniProtKB.::GO:0045892; P:negative regulation of transcription, DNA-dependent; IDA:MGI.::GO:0046831; P:regulation of RNA export from nucleus; IDA:MGI.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
46Q91V33    443   KHDR1_RAT KH domain-containing, RNA-binding, ...1270.000000000007     70.9     31     53GO:0005737; C:cytoplasm; IDA:RGD.::GO:0070618; C:Grb2-Sos complex; IDA:RGD.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0032403; F:protein complex binding; IDA:RGD.::GO:0003723; F:RNA binding; ISS:UniProtKB.::GO:0017124; F:SH3 domain binding; IDA:RGD.::GO:0005070; F:SH3/SH2 adaptor activity; IPI:UniProtKB.
GO:0007166; P:cell surface receptor signaling pathway; IDA:UniProtKB.::GO:0000086; P:G2/M transition of mitotic cell cycle; ISS:UniProtKB.::GO:0045892; P:negative regulation of transcription, DNA-dependent; ISS:UniProtKB.::GO:0046831; P:regulation of RNA export from nucleus; ISS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
47Q07666    443   KHDR1_HUMAN KH domain-containing, RNA-binding...1270.000000000007     70.9     31     53GO:0016020; C:membrane; IDA:UniProtKB.::GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0003677; F:DNA binding; TAS:ProtInc.::GO:0003723; F:RNA binding; IDA:UniProtKB.::GO:0017124; F:SH3 domain binding; IEA:UniProtKB-KW.::GO:0005070; F:SH3/SH2 adaptor activity; IPI:UniProtKB.
GO:0007050; P:cell cycle arrest; TAS:ProtInc.::GO:0008283; P:cell proliferation; TAS:ProtInc.::GO:0007166; P:cell surface receptor signaling pathway; IDA:UniProtKB.::GO:0000086; P:G2/M transition of mitotic cell cycle; ISS:UniProtKB.::GO:0006397; P:mRNA processing; TAS:ProtInc.::GO:0045892; P:negative regulation of transcription, DNA-dependent; ISS:UniProtKB.::GO:0046831; P:regulation of RNA export from nucleus; ISS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
48Q8UUW7    433   KHDR1_CHICK KH domain-containing, RNA-binding...1280.00000000002     69.7     31     52GO:0016020; C:membrane; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0003723; F:RNA binding; ISS:UniProtKB.::GO:0017124; F:SH3 domain binding; IEA:UniProtKB-KW.::GO:0005070; F:SH3/SH2 adaptor activity; ISS:UniProtKB.
GO:0007166; P:cell surface receptor signaling pathway; ISS:UniProtKB.::GO:0000086; P:G2/M transition of mitotic cell cycle; IDA:UniProtKB.::GO:0045892; P:negative regulation of transcription, DNA-dependent; ISS:UniProtKB.::GO:0046831; P:regulation of RNA export from nucleus; ISS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
49P13230    308   GRP33_ARTSA Glycine-rich protein GRP33 OS=Art...740.000000009     60.5     42     66GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
50O76743    1156   GLH4_CAEEL ATP-dependent RNA helicase glh-4 O...417.2     33.1     32     49GO:0043186; C:P granule; IDA:WormBase.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0008432; F:JUN kinase binding; IPI:WormBase.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0007276; P:gamete generation; IMP:WormBase.::GO:0042127; P:regulation of cell proliferation; IMP:WormBase.
51Q09911    534   YAJE_SCHPO Uncharacterized protein C30D11.14c...910.011     42     21     53GO:0005634; C:nucleus; IDA:PomBase.
GO:0003723; F:RNA binding; IEA:InterPro.
GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; NAS:PomBase.
52Q04832    271   HEXP_LEIMA DNA-binding protein HEXBP OS=Leish...711.7     34.3     35     41GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
53B1GZG8    689   PNP_UNCTG Polyribonucleotide nucleotidyltrans...670.034     40.4     37     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
54O73932    594   IF23A_XENLA Insulin-like growth factor 2 mRNA...440.041     40     43     66GO:0005783; C:endoplasmic reticulum; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IPI:UniProtKB.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003730; F:mRNA 3'-UTR binding; IDA:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
55O57526    593   IF23B_XENLA Insulin-like growth factor 2 mRNA...440.041     40     43     66GO:0005783; C:endoplasmic reticulum; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
56Q8R1J3    273   ZCHC9_MOUSE Zinc finger CCHC domain-containin...810.049     39.3     33     41
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0010923; P:negative regulation of phosphatase activity; ISS:UniProtKB.
57Q5ZLP8    584   IF2B3_CHICK Insulin-like growth factor 2 mRNA...440.052     39.7     43     66GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
58Q8UVD9    769   FUBP2_CHICK Far upstream element-binding prot...1360.057     39.7     26     42GO:0005737; C:cytoplasm; IDA:UniProtKB.::GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0003730; F:mRNA 3'-UTR binding; IDA:UniProtKB.
GO:0008298; P:intracellular mRNA localization; NAS:UniProtKB.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.
59Q6ZST2    131   ZCH23_HUMAN Zinc finger CCHC domain-containin...260.087     37     62     73
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
60O00425    579   IF2B3_HUMAN Insulin-like growth factor 2 mRNA...430.17     38.1     42     65GO:0005829; C:cytosol; TAS:Reactome.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003730; F:mRNA 3'-UTR binding; IDA:UniProtKB.::GO:0048027; F:mRNA 5'-UTR binding; IDA:BHF-UCL.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0045182; F:translation regulator activity; ISS:BHF-UCL.
GO:0009653; P:anatomical structure morphogenesis; TAS:ProtInc.::GO:0017148; P:negative regulation of translation; ISS:BHF-UCL.::GO:0042035; P:regulation of cytokine biosynthetic process; IC:BHF-UCL.::GO:0006412; P:translation; TAS:ProtInc.
61Q9CPN8    579   IF2B3_MOUSE Insulin-like growth factor 2 mRNA...430.17     38.1     42     65GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
records
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