Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR115W
Length:
859
Number of sequences:
5887
Description:
YLR115W CFT2 SGDID:S000004105, Chr XII from 377985-380564, Genome Release 64-1-1, Verified ORF, "Subunit of the mRNA cleavage and polyadenlylation factor (CPF); required for pre-mRNA cleavage, polyadenylation and poly(A) site recognition, 43% similarity with the mammalian CPSF-100 protein."
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
31Q5ZKK2    658   INT9_CHICK Integrator complex subunit 9 OS=Ga...3640.036     41.2     20     38
32Q2KJA6    658   INT9_BOVIN Integrator complex subunit 9 OS=Bo...3680.036     41.2     21     38GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
33Q4R5Z4    637   INT9_MACFA Integrator complex subunit 9 OS=Ma...3680.1     40     20     39GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
34Q8K114    658   INT9_MOUSE Integrator complex subunit 9 OS=Mu...2780.15     39.3     21     40
35Q9UKF6    684   CPSF3_HUMAN Cleavage and polyadenylation spec...2550.28     38.5     22     43GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; IDA:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0008409; F:5'-3' exonuclease activity; ISS:UniProtKB.::GO:0004521; F:endoribonuclease activity; ISS:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0006398; P:histone mRNA 3'-end processing; IDA:UniProtKB.::GO:0006379; P:mRNA cleavage; TAS:ProtInc.::GO:0006406; P:mRNA export from nucleus; TAS:Reactome.::GO:0006378; P:mRNA polyadenylation; TAS:ProtInc.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
36P79101    684   CPSF3_BOVIN Cleavage and polyadenylation spec...2550.29     38.5     22     43GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0008409; F:5'-3' exonuclease activity; ISS:UniProtKB.::GO:0004521; F:endoribonuclease activity; ISS:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0006398; P:histone mRNA 3'-end processing; ISS:UniProtKB.
37Q9QXK7    684   CPSF3_MOUSE Cleavage and polyadenylation spec...2550.3     38.5     22     43GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0008409; F:5'-3' exonuclease activity; IDA:UniProtKB.::GO:0004521; F:endoribonuclease activity; IDA:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IDA:UniProtKB.
GO:0006398; P:histone mRNA 3'-end processing; IDA:UniProtKB.
38A9KMC2    132   NUSB_CLOPH N utilization substance protein B ...713     33.5     31     52
GO:0003723; F:RNA binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006353; P:transcription termination, DNA-dependent; IEA:UniProtKB-KW.
39Q5BEP0    884   YSH1_EMENI Endoribonuclease ysh1 OS=194 / M13...2674.1     34.7     19     41GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
40O22340    637   TPSDA_ABIGR Limonene synthase, chloroplastic ...1704.5     34.7     21     43GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
GO:0050552; F:(4S)-limonene synthase activity; IEA:EC.::GO:0000287; F:magnesium ion binding; IEA:InterPro.
41Q2KIP2    781   HASP_BOVIN Serine/threonine-protein kinase ha...1117.3     33.9     27     44GO:0005813; C:centrosome; ISS:UniProtKB.::GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; ISS:UniProtKB.::GO:0005819; C:spindle; ISS:UniProtKB.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0072354; F:histone kinase activity (H3-T3 specific); ISS:UniProtKB.
GO:0007064; P:mitotic sister chromatid cohesion; ISS:UniProtKB.::GO:0071459; P:protein localization to chromosome, centromeric region; ISS:UniProtKB.::GO:0090231; P:regulation of spindle checkpoint; ISS:UniProtKB.
42Q8PAV6    185   RRF_XANCP Ribosome-recycling factor OS=LMG 56...1428     32.7     26     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0006412; P:translation; IEA:UniProtKB-KW.
43B0RW69    185   RRF_XANCB Ribosome-recycling factor OS=Xantho...1428     32.7     26     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0006412; P:translation; IEA:UniProtKB-KW.
44Q4USQ7    185   RRF_XANC8 Ribosome-recycling factor OS=Xantho...1428     32.7     26     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0006412; P:translation; IEA:UniProtKB-KW.
45Q6GQI5    609   CCD93_XENLA Coiled-coil domain-containing pro...2269.8     33.5     23     45
records
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