Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR115W
Length:
859
Number of sequences:
5887
Description:
YLR115W CFT2 SGDID:S000004105, Chr XII from 377985-380564, Genome Release 64-1-1, Verified ORF, "Subunit of the mRNA cleavage and polyadenlylation factor (CPF); required for pre-mRNA cleavage, polyadenylation and poly(A) site recognition, 43% similarity with the mammalian CPSF-100 protein."
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1Q12102    859   CFT2_YEAST Cleavage factor two protein 2 OS=S...8590     1753     100     100GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; IDA:SGD.
GO:0003723; F:RNA binding; IPI:SGD.
GO:0006379; P:mRNA cleavage; IDA:SGD.::GO:0006378; P:mRNA polyadenylation; TAS:SGD.
2Q9LKF9    739   CPSF2_ARATH Cleavage and polyadenylation spec...8213e-42     168     23     40GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; NAS:TAIR.::GO:0009506; C:plasmodesma; IDA:TAIR.
GO:0016787; F:hydrolase activity; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0035194; P:posttranscriptional gene silencing by RNA; IMP:TAIR.
3Q652P4    738   CPSF2_ORYSJ Cleavage and polyadenylation spec...8581e-41     166     24     41GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016787; F:hydrolase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
4Q9P2I0    782   CPSF2_HUMAN Cleavage and polyadenylation spec...3962e-28     126     28     47GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; IDA:UniProtKB.
GO:0016787; F:hydrolase activity; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006398; P:histone mRNA 3'-end processing; IDA:UniProtKB.::GO:0006406; P:mRNA export from nucleus; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
5Q10568    782   CPSF2_BOVIN Cleavage and polyadenylation spec...3962e-28     126     28     47GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:UniProtKB.
GO:0016787; F:hydrolase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006398; P:histone mRNA 3'-end processing; ISS:UniProtKB.
6O35218    782   CPSF2_MOUSE Cleavage and polyadenylation spec...3963e-28     125     28     46GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:UniProtKB.
GO:0016787; F:hydrolase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006398; P:histone mRNA 3'-end processing; ISS:UniProtKB.
7Q9W799    783   CPSF2_XENLA Cleavage and polyadenylation spec...3624e-28     125     28     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:UniProtKB.
GO:0016787; F:hydrolase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
8Q9V3D6    756   CPSF2_DROME Probable cleavage and polyadenyla...3077e-27     121     30     52GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:FlyBase.
GO:0016787; F:hydrolase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006398; P:histone mRNA 3'-end processing; IMP:FlyBase.::GO:0006379; P:mRNA cleavage; ISS:FlyBase.::GO:0006378; P:mRNA polyadenylation; IMP:FlyBase.
9A8XUS3    842   CPSF2_CAEBR Probable cleavage and polyadenyla...7605e-22     105     22     42GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016787; F:hydrolase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
10O17403    843   CPSF2_CAEEL Probable cleavage and polyadenyla...1162.1     35.8     29     49GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016787; F:hydrolase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000910; P:cytokinesis; IMP:WormBase.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0040035; P:hermaphrodite genitalia development; IMP:WormBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0040027; P:negative regulation of vulval development; IMP:WormBase.::GO:0016246; P:RNA interference; IMP:WormBase.
11Q55BS1    784   CPSF2_DICDI Cleavage and polyadenylation spec...3643e-16     87.4     25     46GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:dictyBase.
GO:0016787; F:hydrolase activity; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:dictyBase.
GO:0006379; P:mRNA cleavage; ISS:dictyBase.::GO:0006378; P:mRNA polyadenylation; ISS:dictyBase.
12Q6FUA5    771   YSH1_CANGA Endoribonuclease YSH1 OS=NRRL Y-65...3200.00000000009     69.3     23     45GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
13O74740    797   CFT2_SCHPO Cleavage factor two protein 2 OS=S...2430.0000000005     67     25     45GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; IDA:PomBase.
GO:0006379; P:mRNA cleavage; ISS:PomBase.::GO:0006378; P:mRNA polyadenylation; ISS:PomBase.
14Q74ZC0    771   YSH1_ASHGO Endoribonuclease YSH1 OS=Y-1056) (...3200.000000001     65.9     22     45GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
15Q06224    779   YSH1_YEAST Endoribonuclease YSH1 OS=Saccharom...3200.0000002     58.9     21     45GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; IDA:SGD.
GO:0004521; F:endoribonuclease activity; IMP:SGD.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0006379; P:mRNA cleavage; IMP:SGD.::GO:0006378; P:mRNA polyadenylation; IMP:SGD.::GO:0031126; P:snoRNA 3'-end processing; IMP:SGD.::GO:0034247; P:snoRNA splicing; IMP:SGD.::GO:0006369; P:termination of RNA polymerase II transcription; IMP:SGD.
16Q6CUI5    764   YSH1_KLULA Endoribonuclease YSH1 OS=1267 / NR...3180.0000006     57     21     44GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
17O13794    757   YSH1_SCHPO Endoribonuclease ysh1 OS=Schizosac...3150.00003     51.6     20     42GO:0005829; C:cytosol; IDA:PomBase.::GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; IDA:PomBase.
GO:0004521; F:endoribonuclease activity; ISS:PomBase.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006379; P:mRNA cleavage; IC:PomBase.::GO:0006378; P:mRNA polyadenylation; IC:PomBase.
18Q5SLP1    431   RNSE_THET8 Ribonuclease TTHA0252 OS=Thermus t...2960.00004     50.8     22     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
19Q59P50    870   YSH1_CANAL Endoribonuclease YSH1 OS=Candida a...2480.00007     50.4     21     45GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0042493; P:response to drug; IMP:CGD.
20Q9C952    693   CPSF3_ARATH Cleavage and polyadenylation spec...2530.00008     50.1     23     42GO:0005634; C:nucleus; IDA:TAIR.
GO:0004518; F:nuclease activity; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
21Q6C2Z7    827   YSH1_YARLI Endoribonuclease YSH1 OS=lipolytic...2620.0001     49.7     22     41GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
22Q6DFF4    658   INT9_XENLA Integrator complex subunit 9 OS=Xe...3670.0006     47     22     38GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
23Q3MHC2    600   INT11_RAT Integrator complex subunit 11 OS=Ra...2910.0007     47     23     41GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
24Q5TA45    600   INT11_HUMAN Integrator complex subunit 11 OS=...2910.0007     47     23     41GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
25Q9CWS4    600   INT11_MOUSE Integrator complex subunit 11 OS=...2910.0008     47     23     41GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0032039; C:integrator complex; ISS:HGNC.
GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
GO:0016180; P:snRNA processing; ISS:HGNC.
26Q5NVE6    600   INT11_PONAB Integrator complex subunit 11 OS=...2910.0008     46.6     23     41GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
27Q6BMW3    815   YSH1_DEBHA Endoribonuclease YSH1 OS=0083 / IG...2640.0008     47     21     43GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
28A7SBF0    660   INT9_NEMVE Integrator complex subunit 9 homol...1850.005     44.3     26     44GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
29Q54SH0    712   INT9_DICDI Integrator complex subunit 9 homol...2730.016     42.7     22     45GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
30Q9NV88    658   INT9_HUMAN Integrator complex subunit 9 OS=Ho...3680.036     41.6     21     39GO:0032039; C:integrator complex; IDA:HGNC.
GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0016180; P:snRNA processing; IDA:HGNC.
31Q5ZKK2    658   INT9_CHICK Integrator complex subunit 9 OS=Ga...3640.036     41.2     20     38
records
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