Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR107W
Length:
404
Number of sequences:
5887
Description:
YLR107W REX3 SGDID:S000004097, Chr XII from 364116-365330, Genome Release 64-1-1, Verified ORF, "RNA exonuclease; required for maturation of the RNA component of RNase MRP; functions redundantly with Rnh70p and Rex2p in processing of U5 snRNA and RNase P RNA; member of RNase D family of exonucleases"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1Q12090    404   REXO3_YEAST RNA exonuclease 3 OS=Saccharomyce...4040     835     100     100GO:0005737; C:cytoplasm; IDA:SGD.::GO:0005634; C:nucleus; IDA:SGD.
GO:0000175; F:3'-5'-exoribonuclease activity; IMP:SGD.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0043628; P:ncRNA 3'-end processing; IMP:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
2Q6FIU7    398   REXO3_CANGA RNA exonuclease 3 OS=NRRL Y-65) (...3998e-151     439     53     73GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
3Q750A5    382   REXO3_ASHGO RNA exonuclease 3 OS=Y-1056) (Yea...4007e-130     385     49     67GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
4Q6CJB5    478   REXO3_KLULA RNA exonuclease 3 OS=1267 / NRRL ...3994e-127     382     47     68GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
5Q5AL29    404   REXO3_CANAL RNA exonuclease 3 OS=Candida albi...3977e-50     179     31     52GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
6Q5B367    638   REXO3_EMENI RNA exonuclease 3 OS=194 / M139) ...3644e-39     152     31     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
7Q4WYA1    645   REXO3_ASPFU RNA exonuclease 3 OS=A1100) (Aspe...3165e-39     151     33     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
8Q6CFE7    757   REXO3_YARLI RNA exonuclease 3 OS=lipolytica)....1633e-37     147     46     68GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
9Q9P7H2    540   REXO3_SCHPO RNA exonuclease 3 OS=Schizosaccha...2905e-34     136     33     49GO:0005739; C:mitochondrion; IDA:PomBase.::GO:0005634; C:nucleus; IDA:PomBase.
GO:0008408; F:3'-5' exonuclease activity; ISS:PomBase.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0000467; P:exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:PomBase.::GO:0034476; P:U5 snRNA 3'-end processing; ISS:PomBase.
10Q8IX06    675   GOR_HUMAN Exonuclease GOR OS=Homo sapiens (Hu...3005e-32     131     32     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
11A0PJM3    583   GORL_HUMAN Putative exonuclease GOR-like prot...2991e-31     130     31     49GO:0005622; C:intracellular; IEA:InterPro.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
12P48778    690   GOR_PANTR Exonuclease GOR OS=Pan troglodytes ...3001e-30     127     31     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
13Q10124    1647   PQE1_CAEEL Putative RNA exonuclease pqe-1 OS=...3872e-30     128     30     47GO:0005634; C:nucleus; IDA:WormBase.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
14Q7TT28    1213   REXO1_MOUSE RNA exonuclease 1 homolog OS=Mus ...2963e-28     122     31     49GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
15Q8L7M4    567   SDN5_ARATH Small RNA degrading nuclease 5 OS=...1613e-25     111     40     60GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
16Q8N1G1    1221   REXO1_HUMAN RNA exonuclease 1 homolog OS=Homo...2962e-23     106     30     48GO:0005634; C:nucleus; IDA:HPA.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
17P53331    553   REXO1_YEAST RNA exonuclease 1 OS=Saccharomyce...1602e-22     102     39     62GO:0005634; C:nucleus; IDA:SGD.
GO:0000175; F:3'-5'-exoribonuclease activity; IMP:SGD.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0002107; P:generation of mature 3'-end of 5S rRNA generated by RNA polymerase III; IMP:SGD.::GO:0034415; P:tRNA 3'-trailer cleavage, exonucleolytic; IMP:SGD.
18O94443    631   YFE9_SCHPO Uncharacterized exonuclease C637.0...1625e-22     101     36     60GO:0005634; C:nucleus; IDA:PomBase.
GO:0008408; F:3'-5' exonuclease activity; ISS:PomBase.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0000467; P:exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:PomBase.::GO:0034415; P:tRNA 3'-trailer cleavage, exonucleolytic; ISS:PomBase.::GO:0034476; P:U5 snRNA 3'-end processing; ISS:PomBase.
19Q4PER6    375   REXO4_USTMA RNA exonuclease 4 OS=Ustilago may...1610.000000000000006     79.3     38     53GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
20Q2T9U5    783   REXON_BOVIN Putative RNA exonuclease NEF-sp O...1620.000000000000009     79.7     31     56
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
21Q6FQA0    263   REXO4_CANGA RNA exonuclease 4 OS=NRRL Y-65) (...1670.00000000000004     75.5     35     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
22Q6DEW6    414   REXO4_XENTR RNA exonuclease 4 OS=Xenopus trop...1580.00000000000004     77     34     51GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
23O94375    260   REXO4_SCHPO RNA exonuclease 4 OS=Schizosaccha...1690.00000000000005     75.1     30     54GO:0005730; C:nucleolus; IDA:PomBase.
GO:0008408; F:3'-5' exonuclease activity; ISS:PomBase.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006364; P:rRNA processing; ISS:PomBase.
24Q08237    289   REXO4_YEAST RNA exonuclease 4 OS=Saccharomyce...1560.00000000000008     74.7     35     53GO:0005730; C:nucleolus; IDA:SGD.
GO:0008408; F:3'-5' exonuclease activity; ISS:SGD.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0000027; P:ribosomal large subunit assembly; IGI:SGD.::GO:0006364; P:rRNA processing; IGI:SGD.
25Q4R9F7    772   REXON_MACFA Putative RNA exonuclease NEF-sp O...1620.0000000000001     76.3     30     55GO:0005622; C:intracellular; IEA:InterPro.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
26Q96IC2    774   REXON_HUMAN Putative RNA exonuclease NEF-sp O...1530.0000000000002     75.9     31     56GO:0005730; C:nucleolus; IDA:LIFEdb.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
27A1A5R7    754   REXON_RAT Putative RNA exonuclease NEF-sp OS=...1910.0000000000003     75.5     29     51
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
28A3KPE8    409   SDN1_ARATH Small RNA degrading nuclease 1 OS=...1790.0000000000003     74.3     31     50GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0008408; F:3'-5' exonuclease activity; IDA:TAIR.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0010587; P:miRNA catabolic process; IDA:TAIR.
29Q91560    421   REXO4_XENLA RNA exonuclease 4 OS=Xenopus laev...1580.0000000000008     73.2     34     52GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
30Q6PAQ4    432   REXO4_MOUSE RNA exonuclease 4 OS=Mus musculus...1570.000000000002     72.4     35     52GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
31B2GUW6    332   AEN_RAT Apoptosis-enhancing nuclease OS=Rattu...1810.000000000004     70.5     28     48GO:0005730; C:nucleolus; ISS:UniProtKB.::GO:0005654; C:nucleoplasm; ISS:UniProtKB.
GO:0004527; F:exonuclease activity; ISS:UniProtKB.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0042771; P:DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis; ISS:UniProtKB.::GO:0010212; P:response to ionizing radiation; ISS:UniProtKB.
records
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