Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR107W
Length:
404
Number of sequences:
5887
Description:
YLR107W REX3 SGDID:S000004097, Chr XII from 364116-365330, Genome Release 64-1-1, Verified ORF, "RNA exonuclease; required for maturation of the RNA component of RNase MRP; functions redundantly with Rnh70p and Rex2p in processing of U5 snRNA and RNase P RNA; member of RNase D family of exonucleases"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
61A5E1W0    1234   PAN2_LODEL PAB-dependent poly(A)-specific rib...1550.0000007     55.1     31     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
62Q6CMN5    1144   PAN2_KLULA PAB-dependent poly(A)-specific rib...680.000002     53.9     37     63GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
63Q9JL16    300   ISG20_MOUSE Interferon-stimulated gene 20 kDa...1490.000004     52     29     50
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0045087; P:innate immune response; IEA:UniProtKB-KW.::GO:0009615; P:response to virus; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
64Q6BZ78    1124   PAN2_DEBHA PAB-dependent poly(A)-specific rib...700.00001     51.2     43     60GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
65P53010    1115   PAN2_YEAST PAB-dependent poly(A)-specific rib...790.00003     50.1     38     57GO:0031251; C:PAN complex; IDA:SGD.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0031124; P:mRNA 3'-end processing; IMP:SGD.::GO:0006301; P:postreplication repair; IGI:SGD.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
66P0C581    1236   PAN2_NEUCR PAB-dependent poly(A)-specific rib...1230.00003     50.1     32     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
67Q0UPL5    1129   PAN2_PHANO PAB-dependent poly(A)-specific rib...1330.00005     49.3     28     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
68P53015    1131   YPO4_CAEEL Uncharacterized protein F31E3.4 OS...1360.0001     48.1     31     48GO:0005622; C:intracellular; IEA:InterPro.
GO:0004527; F:exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
69Q754X1    1162   PAN2_ASHGO PAB-dependent poly(A)-specific rib...720.0001     47.8     36     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
70Q6FS70    1093   PAN2_CANGA PAB-dependent poly(A)-specific rib...760.0007     45.4     34     55GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
71Q5F450    1197   PAN2_CHICK PAB-dependent poly(A)-specific rib...830.0008     45.4     35     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
72Q6IE70    1205   PAN2_RAT PAB-dependent poly(A)-specific ribon...830.001     44.7     33     55GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
73Q504Q3    1202   PAN2_HUMAN PAB-dependent poly(A)-specific rib...830.001     44.7     33     55GO:0005829; C:cytosol; TAS:Reactome.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; TAS:Reactome.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; TAS:Reactome.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
74Q8BGF7    1200   PAN2_MOUSE PAB-dependent poly(A)-specific rib...830.001     44.7     33     55GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
75A4RF51    1150   PAN2_MAGO7 PAB-dependent poly(A)-specific rib...1660.002     44.7     32     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
76Q2GSV2    1102   PAN2_CHAGB PAB-dependent poly(A)-specific rib...700.089     38.9     37     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
77A1CEK7    1161   PAN2_ASPCL PAB-dependent poly(A)-specific rib...840.13     38.1     32     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
78Q5BBL5    1154   PAN2_EMENI PAB-dependent poly(A)-specific rib...1360.46     36.6     27     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
79Q4WHP6    1155   PAN2_ASPFU PAB-dependent poly(A)-specific rib...840.94     35.4     30     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
80A1DFN6    1161   PAN2_NEOFI PAB-dependent poly(A)-specific rib...840.95     35.4     30     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
81Q498T9    803   LRC8C_RAT Leucine-rich repeat-containing prot...1302.4     34.3     27     40GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
82Q8TDW0    803   LRC8C_HUMAN Leucine-rich repeat-containing pr...1302.6     34.3     27     40GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
83Q0CJU7    1159   PAN2_ASPTN PAB-dependent poly(A)-specific rib...842.7     34.3     29     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
84Q8R502    803   LRC8C_MOUSE Leucine-rich repeat-containing pr...1302.7     33.9     27     40GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
85Q914H6    591   Y056_SIFVH Uncharacterized protein 56 OS=(SIF...813.2     33.9     26     44
86A2QW83    1150   PAN2_ASPNC PAB-dependent poly(A)-specific rib...684.9     33.1     29     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
87Q2ULU6    1155   PAN2_ASPOR PAB-dependent poly(A)-specific rib...845.2     33.1     30     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
88Q54U94    298   REXO4_DICDI RNA exonuclease 4 OS=Dictyosteliu...1015.4     32.7     21     46GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004518; F:nuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
89Q23551    7158   UNC22_CAEEL Twitchin OS=Caenorhabditis elegan...876.9     32.7     28     44GO:0031672; C:A band; IDA:WormBase.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0005516; F:calmodulin binding; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0004674; F:protein serine/threonine kinase activity; IEA:UniProtKB-KW.
GO:0040011; P:locomotion; IMP:WormBase.::GO:0040015; P:negative regulation of multicellular organism growth; IMP:WormBase.::GO:0040027; P:negative regulation of vulval development; IMP:WormBase.::GO:0040018; P:positive regulation of multicellular organism growth; IMP:WormBase.::GO:0000003; P:reproduction; IMP:WormBase.
90A5PK13    803   LRC8C_BOVIN Leucine-rich repeat-containing pr...1307.8     32.7     26     40GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
records
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