Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLR107W
Length:
404
Number of sequences:
5887
Description:
YLR107W REX3 SGDID:S000004097, Chr XII from 364116-365330, Genome Release 64-1-1, Verified ORF, "RNA exonuclease; required for maturation of the RNA component of RNase MRP; functions redundantly with Rnh70p and Rex2p in processing of U5 snRNA and RNase P RNA; member of RNase D family of exonucleases"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
31B2GUW6    332   AEN_RAT Apoptosis-enhancing nuclease OS=Rattu...1810.000000000004     70.5     28     48GO:0005730; C:nucleolus; ISS:UniProtKB.::GO:0005654; C:nucleoplasm; ISS:UniProtKB.
GO:0004527; F:exonuclease activity; ISS:UniProtKB.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0042771; P:DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis; ISS:UniProtKB.::GO:0010212; P:response to ionizing radiation; ISS:UniProtKB.
32Q6AXU3    369   I20L2_RAT Interferon-stimulated 20 kDa exonuc...1630.00000000001     69.3     31     52GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
33Q8RXK2    782   SDN3_ARATH Small RNA degrading nuclease 3 OS=...1590.00000000001     70.1     32     55GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
34Q8WTP8    325   AEN_HUMAN Apoptosis-enhancing nuclease OS=Hom...1620.00000000002     68.2     28     50GO:0005730; C:nucleolus; IDA:UniProtKB.::GO:0005654; C:nucleoplasm; IDA:UniProtKB.
GO:0004527; F:exonuclease activity; IDA:UniProtKB.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0042771; P:DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis; IDA:UniProtKB.::GO:0010212; P:response to ionizing radiation; IDA:UniProtKB.
35Q9H9L3    353   I20L2_HUMAN Interferon-stimulated 20 kDa exon...1630.00000000003     67.8     31     52GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
36Q757I9    285   REXO4_ASHGO RNA exonuclease 4 OS=Y-1056) (Yea...1620.00000000006     66.2     30     52GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
37Q9GZR2    422   REXO4_HUMAN RNA exonuclease 4 OS=Homo sapiens...1590.00000000007     67.4     35     51GO:0005730; C:nucleolus; IDA:LIFEdb.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; NAS:UniProtKB.
38Q5REE2    325   AEN_PONAB Apoptosis-enhancing nuclease OS=Pon...1620.00000000007     66.6     28     50GO:0005730; C:nucleolus; ISS:UniProtKB.::GO:0005654; C:nucleoplasm; ISS:UniProtKB.
GO:0004527; F:exonuclease activity; ISS:UniProtKB.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0042771; P:DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis; ISS:UniProtKB.::GO:0010212; P:response to ionizing radiation; ISS:UniProtKB.
39Q2YDK1    349   I20L2_BOVIN Interferon-stimulated 20 kDa exon...1630.00000000008     66.6     32     53GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
40Q3U1G5    368   I20L2_MOUSE Interferon-stimulated 20 kDa exon...1630.00000000009     66.6     31     51GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
41Q4IEV5    319   REXO4_GIBZE RNA exonuclease 4 OS=(Wheat head ...1600.0000000002     65.5     31     51GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
42Q9CZI9    336   AEN_MOUSE Apoptosis-enhancing nuclease OS=Mus...1810.0000000002     65.1     27     45GO:0005730; C:nucleolus; ISS:UniProtKB.::GO:0005654; C:nucleoplasm; ISS:UniProtKB.
GO:0004527; F:exonuclease activity; ISS:UniProtKB.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0042771; P:DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis; ISS:UniProtKB.::GO:0010212; P:response to ionizing radiation; ISS:UniProtKB.
43Q7S9B7    406   REXO4_NEUCR RNA exonuclease 4 OS=1257 / FGSC ...1520.0000000004     64.7     32     51GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
44Q6CMT3    294   REXO4_KLULA RNA exonuclease 4 OS=1267 / NRRL ...1610.0000000008     63.2     31     52GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
45Q6BIK6    272   REXO4_DEBHA RNA exonuclease 4 OS=0083 / IGC 2...1760.000000002     61.2     31     49GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
46Q6CE69    291   REXO4_YARLI RNA exonuclease 4 OS=lipolytica)....1550.000000003     61.2     33     48GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
47Q66UW5    181   ISG20_PIG Interferon-stimulated gene 20 kDa p...1690.000000004     59.3     30     50GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0045087; P:innate immune response; IEA:UniProtKB-KW.::GO:0009615; P:response to virus; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
48Q5APK0    1190   PAN2_CANAL PAB-dependent poly(A)-specific rib...1250.000000007     61.6     36     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
49Q5A3Q0    285   REXO4_CANAL RNA exonuclease 4 OS=Candida albi...1570.00000001     59.3     31     50GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
50P0CQ44    408   REXO4_CRYNJ RNA exonuclease 4 OS=ATCC MYA-565...1700.00000001     60.1     29     48GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
51P0CQ45    408   REXO4_CRYNB RNA exonuclease 4 OS=(Filobasidie...1700.00000001     60.1     29     48GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
52A3LRV8    1183   PAN2_PICST PAB-dependent poly(A)-specific rib...1350.00000004     59.3     33     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
53Q96AZ6    181   ISG20_HUMAN Interferon-stimulated gene 20 kDa...1690.00000006     55.8     28     50GO:0016605; C:PML body; IDA:UniProtKB.
GO:0000175; F:3'-5'-exoribonuclease activity; IDA:UniProtKB.::GO:0008859; F:exoribonuclease II activity; IEA:EC.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008310; F:single-stranded DNA specific 3'-5' exodeoxyribonuclease activity; IDA:UniProtKB.
GO:0008283; P:cell proliferation; TAS:ProtInc.::GO:0000738; P:DNA catabolic process, exonucleolytic; IDA:UniProtKB.::GO:0009615; P:response to virus; IDA:UniProtKB.::GO:0006401; P:RNA catabolic process; IDA:UniProtKB.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0060337; P:type I interferon-mediated signaling pathway; TAS:Reactome.
54Q6C462    1008   PAN2_YARLI PAB-dependent poly(A)-specific rib...1070.0000001     57.8     36     55GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
55Q4WHF8    310   REXO4_ASPFU RNA exonuclease 4 OS=A1100) (Aspe...1530.0000001     56.6     31     49GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
56A5DAD0    1098   PAN2_PICGU PAB-dependent poly(A)-specific rib...1260.0000001     57.4     34     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
57P0CQ08    1183   PAN2_CRYNJ PAB-dependent poly(A)-specific rib...1210.0000002     57.4     32     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
58P0CQ09    1183   PAN2_CRYNB PAB-dependent poly(A)-specific rib...1210.0000002     57.4     32     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
59Q09798    1088   PAN2_SCHPO PAB-dependent poly(A)-specific rib...1250.0000002     57     31     51GO:0031251; C:PAN complex; ISS:PomBase.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; ISS:PomBase.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; ISS:PomBase.::GO:0006301; P:postreplication repair; ISS:PomBase.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
60Q9FFG1    466   SDN2_ARATH Small RNA degrading nuclease 2 OS=...1630.0000004     55.5     28     49GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
61A5E1W0    1234   PAN2_LODEL PAB-dependent poly(A)-specific rib...1550.0000007     55.1     31     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
records
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