Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YLL039C
Length:
381
Number of sequences:
5887
Description:
YLL039C UBI4 SGDID:S000003962, Chr XII from 65207-64062, Genome Release 64-1-1, reverse complement, Verified ORF, "Ubiquitin, becomes conjugated to proteins, marking them for selective degradation via the ubiquitin-26S proteasome system; essential for the cellular stress response; encoded as a polyubiquitin precursor comprised of 5 head-to-tail repeats"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
241Q10169    354   DSK2_SCHPO Deubiquitination-protection protei...550.032     39.7     40     60GO:0005829; C:cytosol; IDA:PomBase.::GO:0005634; C:nucleus; IDA:PomBase.
GO:0031593; F:polyubiquitin binding; IDA:PomBase.
GO:0033554; P:cellular response to stress; NAS:PomBase.::GO:0030433; P:ER-associated protein catabolic process; ISS:PomBase.::GO:0042177; P:negative regulation of protein catabolic process; IMP:PomBase.::GO:0030474; P:spindle pole body duplication; ISS:PomBase.
242Q84L31    419   RD23C_ARATH Putative DNA repair protein RAD23...750.005     42.4     33     57GO:0005634; C:nucleus; IDA:TAIR.
GO:0003684; F:damaged DNA binding; IEA:InterPro.::GO:0070628; F:proteasome binding; IDA:TAIR.::GO:0043130; F:ubiquitin binding; IDA:TAIR.
GO:0006289; P:nucleotide-excision repair; IEA:InterPro.::GO:0043161; P:proteasomal ubiquitin-dependent protein catabolic process; IEA:InterPro.
243Q67W65    1810   TAF1_ORYSJ Transcription initiation factor TF...710.032     40     37     58GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
244Q84L33    371   RD23A_ARATH Putative DNA repair protein RAD23...740.007     41.6     39     55GO:0005634; C:nucleus; IDA:TAIR.
GO:0003684; F:damaged DNA binding; IEA:InterPro.::GO:0070628; F:proteasome binding; IDA:TAIR.::GO:0043130; F:ubiquitin binding; IDA:TAIR.
GO:0006289; P:nucleotide-excision repair; IEA:InterPro.::GO:0043161; P:proteasomal ubiquitin-dependent protein catabolic process; IEA:InterPro.
245P62985    69   RL40_CHICK Ubiquitin-60S ribosomal protein L4...170.015     38.1     100     100GO:0010008; C:endosome membrane; TAS:Reactome.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0035419; P:activation of MAPK activity involved in innate immune response; TAS:Reactome.::GO:0002755; P:MyD88-dependent toll-like receptor signaling pathway; TAS:Reactome.::GO:0035681; P:toll-like receptor 15 signaling pathway; TAS:Reactome.::GO:0034134; P:toll-like receptor 2 signaling pathway; TAS:Reactome.::GO:0035682; P:toll-like receptor 21 signaling pathway; TAS:Reactome.::GO:0034138; P:toll-like receptor 3 signaling pathway; TAS:Reactome.::GO:0034142; P:toll-like receptor 4 signaling pathway; TAS:Reactome.::GO:0034146; P:toll-like receptor 5 signaling pathway; TAS:Reactome.::GO:0034154; P:toll-like receptor 7 signaling pathway; TAS:Reactome.::GO:0006412; P:translation; IEA:InterPro.::GO:0019985; P:translesion synthesis; TAS:Reactome.
246Q84L32    368   RD23B_ARATH Putative DNA repair protein RAD23...740.013     40.8     39     55GO:0005634; C:nucleus; IDA:TAIR.
GO:0003684; F:damaged DNA binding; IEA:InterPro.::GO:0070628; F:proteasome binding; IDA:TAIR.::GO:0043130; F:ubiquitin binding; IDA:TAIR.
GO:0006289; P:nucleotide-excision repair; IEA:InterPro.::GO:0043161; P:proteasomal ubiquitin-dependent protein catabolic process; IEA:InterPro.
247A6NFN9    424   ANKUB_HUMAN Protein ANKUB1 OS=Homo sapiens (H...1570.018     40.4     25     45
248Q3UUE9    192   ANKUB_MOUSE Protein ANKUB1 OS=Mus musculus (M...1570.025     39.3     24     43
249P54726    363   RD23A_MOUSE UV excision repair protein RAD23 ...780.067     38.5     32     58GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0000502; C:proteasome complex; IEA:UniProtKB-KW.
GO:0003684; F:damaged DNA binding; IEA:InterPro.
GO:0043161; P:proteasomal ubiquitin-dependent protein catabolic process; IEA:InterPro.
250A3KMV2    362   RD23A_BOVIN UV excision repair protein RAD23 ...650.15     37.7     35     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0000502; C:proteasome complex; IEA:UniProtKB-KW.
GO:0003684; F:damaged DNA binding; IEA:InterPro.
GO:0043161; P:proteasomal ubiquitin-dependent protein catabolic process; IEA:InterPro.
251P54725    363   RD23A_HUMAN UV excision repair protein RAD23 ...780.054     38.9     33     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0000502; C:proteasome complex; IEA:UniProtKB-KW.
GO:0003684; F:damaged DNA binding; IEA:InterPro.::GO:0031593; F:polyubiquitin binding; IDA:UniProtKB.::GO:0003697; F:single-stranded DNA binding; TAS:ProtInc.
GO:0044419; P:interspecies interaction between organisms; IEA:UniProtKB-KW.::GO:0006289; P:nucleotide-excision repair; IDA:UniProtKB.::GO:0045070; P:positive regulation of viral genome replication; IMP:UniProtKB.::GO:0043161; P:proteasomal ubiquitin-dependent protein catabolic process; IEA:InterPro.::GO:0032434; P:regulation of proteasomal ubiquitin-dependent protein catabolic process; IDA:UniProtKB.
252Q29RK4    408   RD23B_BOVIN UV excision repair protein RAD23 ...640.048     39.3     34     59GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000502; C:proteasome complex; IEA:UniProtKB-KW.::GO:0071942; C:XPC complex; ISS:UniProtKB.
GO:0003684; F:damaged DNA binding; IEA:InterPro.
GO:0043161; P:proteasomal ubiquitin-dependent protein catabolic process; IEA:InterPro.
253Q99NB8    596   UBQL4_MOUSE Ubiquilin-4 OS=Mus musculus (Mous...340.14     38.1     56     74GO:0005829; C:cytosol; IDA:MGI.::GO:0005789; C:endoplasmic reticulum membrane; IDA:MGI.::GO:0005634; C:nucleus; ISS:UniProtKB.::GO:0048471; C:perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.
GO:0031593; F:polyubiquitin binding; ISS:UniProtKB.
GO:0032434; P:regulation of proteasomal ubiquitin-dependent protein catabolic process; ISS:UniProtKB.
254A6NDN8    102   UBIML_HUMAN Putative ubiquitin-like protein F...620.15     35.4     31     55
255O74803    368   RHP23_SCHPO UV excision repair protein rhp23 ...650.19     37.4     32     62GO:0005829; C:cytosol; IDA:PomBase.::GO:0005635; C:nuclear envelope; IDA:PomBase.
GO:0003684; F:damaged DNA binding; ISS:PomBase.::GO:0031593; F:polyubiquitin binding; TAS:PomBase.
GO:0030433; P:ER-associated protein catabolic process; ISS:PomBase.::GO:0042177; P:negative regulation of protein catabolic process; IMP:PomBase.::GO:0006289; P:nucleotide-excision repair; IMP:PomBase.::GO:0016567; P:protein ubiquitination; IMP:PomBase.::GO:0007346; P:regulation of mitotic cell cycle; TAS:PomBase.
256Q8C5U9    658   UBQL3_MOUSE Ubiquilin-3 OS=Mus musculus (Mous...530.24     37.4     38     62
257C1H978    698   AMPP1_PARBA Probable Xaa-Pro aminopeptidase P...1140.27     37     24     45
GO:0004177; F:aminopeptidase activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0008237; F:metallopeptidase activity; IEA:UniProtKB-KW.
GO:0009987; P:cellular process; IEA:InterPro.::GO:0006508; P:proteolysis; IEA:UniProtKB-KW.
258P0C895    374   Y2010_ARATH LRR repeats and ubiquitin-like do...610.29     36.6     34     56
259Q92353    468   UBP6_SCHPO Ubiquitin carboxyl-terminal hydrol...610.31     36.6     31     57GO:0005654; C:nucleoplasm; IDA:PomBase.::GO:0000502; C:proteasome complex; IDA:PomBase.
GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.::GO:0004843; F:ubiquitin-specific protease activity; IDA:PomBase.
GO:0043161; P:proteasomal ubiquitin-dependent protein catabolic process; IC:PomBase.::GO:0071947; P:protein deubiquitination involved in ubiquitin-dependent protein catabolic process; IC:PomBase.
260C0SCV1    608   AMPP1_PARBP Probable Xaa-Pro aminopeptidase P...1140.38     36.6     23     46
GO:0004177; F:aminopeptidase activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0008237; F:metallopeptidase activity; IEA:UniProtKB-KW.
GO:0009987; P:cellular process; IEA:InterPro.::GO:0006508; P:proteolysis; IEA:UniProtKB-KW.
261Q9H347    655   UBQL3_HUMAN Ubiquilin-3 OS=Homo sapiens (Huma...580.44     36.2     36     57
262Q9NRR5    601   UBQL4_HUMAN Ubiquilin-4 OS=Homo sapiens (Huma...340.48     36.2     53     74GO:0005829; C:cytosol; ISS:UniProtKB.::GO:0005789; C:endoplasmic reticulum membrane; ISS:UniProtKB.::GO:0005634; C:nucleus; IDA:UniProtKB.::GO:0048471; C:perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.
GO:0031593; F:polyubiquitin binding; IDA:UniProtKB.
GO:0032434; P:regulation of proteasomal ubiquitin-dependent protein catabolic process; IMP:UniProtKB.
263C1GEY4    638   AMPP1_PARBD Probable Xaa-Pro aminopeptidase P...1140.49     36.2     23     46
GO:0004177; F:aminopeptidase activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0008237; F:metallopeptidase activity; IEA:UniProtKB-KW.
GO:0009987; P:cellular process; IEA:InterPro.::GO:0006508; P:proteolysis; IEA:UniProtKB-KW.
264Q6GL38    240   UBTD1_XENTR Ubiquitin domain-containing prote...451.7     33.9     38     51
265Q8RXF1    785   SF3A1_ARATH Probable splicing factor 3A subun...681.1     35     34     57GO:0005684; C:U2-type spliceosomal complex; ISS:UniProtKB.
GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.
266Q9UMX0    589   UBQL1_HUMAN Ubiquilin-1 OS=Homo sapiens (Huma...721.4     34.7     36     53GO:0005783; C:endoplasmic reticulum; IDA:HGNC.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0048471; C:perinuclear region of cytoplasm; NAS:UniProtKB.::GO:0000502; C:proteasome complex; IEA:UniProtKB-KW.
GO:0019900; F:kinase binding; IPI:UniProtKB.
GO:0006915; P:apoptotic process; IMP:HGNC.::GO:0031396; P:regulation of protein ubiquitination; IDA:HGNC.::GO:0001666; P:response to hypoxia; IMP:HGNC.
267Q5R684    589   UBQL1_PONAB Ubiquilin-1 OS=Pongo abelii (Suma...721.5     34.7     36     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0000502; C:proteasome complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
268Q9VZH1    291   CU059_DROME Uncharacterized protein C21orf59 ...1091.7     33.9     27     46
269Q91W67    380   UBL7_MOUSE Ubiquitin-like protein 7 OS=Mus mu...482.2     33.9     44     65
270Q96S82    380   UBL7_HUMAN Ubiquitin-like protein 7 OS=Homo s...482.3     33.9     44     65
271Q2KIS3    380   UBL7_BOVIN Ubiquitin-like protein 7 OS=Bos ta...412.3     33.9     46     68
records
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