Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YKR081C
Length:
344
Number of sequences:
5887
Description:
YKR081C RPF2 SGDID:S000001789, Chr XI from 592540-591506, Genome Release 64-1-1, reverse complement, Verified ORF, "Essential protein involved in the processing of pre-rRNA and the assembly of the 60S ribosomal subunit; interacts with ribosomal protein L11; localizes predominantly to the nucleolus; constituent of 66S pre-ribosomal particles"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P36160    344   RPF2_YEAST Ribosome biogenesis protein RPF2 O...3440     704     100     100GO:0005730; C:nucleolus; IDA:SGD.::GO:0030687; C:preribosome, large subunit precursor; IDA:SGD.
GO:0008097; F:5S rRNA binding; IPI:SGD.::GO:0008312; F:7S RNA binding; IPI:SGD.
GO:0000466; P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000463; P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000027; P:ribosomal large subunit assembly; IMP:SGD.
2Q9UUG1    317   RPF2_SCHPO Ribosome production factor 2 homol...2951e-97     298     53     68GO:0005829; C:cytosol; IDA:PomBase.::GO:0005730; C:nucleolus; IDA:PomBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:PomBase.
GO:0003723; F:RNA binding; ISS:PomBase.
GO:0006364; P:rRNA processing; ISS:PomBase.
3Q9JJ80    306   RPF2_MOUSE Ribosome production factor 2 homol...2941e-69     226     45     59GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
4Q9VEB3    320   RPF2_DROME Ribosome production factor 2 homol...2948e-68     222     40     60GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
5Q9H7B2    306   RPF2_HUMAN Ribosome production factor 2 homol...2945e-67     219     46     59GO:0005730; C:nucleolus; IDA:HPA.
6Q2YDN6    306   RPF2_BOVIN Ribosome production factor 2 homol...2946e-66     216     46     59GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
7Q54DJ0    307   RPF2_DICDI Ribosome production factor 2 homol...2891e-54     187     38     55GO:0005730; C:nucleolus; ISS:dictyBase.
GO:0019843; F:rRNA binding; ISS:dictyBase.
GO:0000027; P:ribosomal large subunit assembly; ISS:dictyBase.
8Q9N3F0    297   RPF2_CAEEL Ribosome production factor 2 homol...2944e-53     182     38     56GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000003; P:reproduction; IMP:WormBase.
9Q9AWM9    310   RPF2_ORYSJ Ribosome production factor 2 homol...3026e-45     161     35     55GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
10Q9LUG5    314   RPF2_ARATH Ribosome production factor 2 homol...2918e-41     150     35     53GO:0005730; C:nucleolus; IDA:TAIR.
11Q3AA34    1090   ADDB_CARHZ ATP-dependent helicase/deoxyribonu...1303.3     33.5     23     47
GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW.::GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004527; F:exonuclease activity; ISS:TIGR.::GO:0004386; F:helicase activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006302; P:double-strand break repair; ISS:TIGR.
12Q5SD19    219   RR3_HUPLU 30S ribosomal protein S3, chloropla...743.6     32.7     26     54GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0015935; C:small ribosomal subunit; IEA:InterPro.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
records
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