Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YKR008W
Length:
625
Number of sequences:
5887
Description:
YKR008W RSC4 SGDID:S000001716, Chr XI from 452201-454078, Genome Release 64-1-1, Verified ORF, "Component of the RSC chromatin remodeling complex; found in close proximity to nucleosomal DNA; displaced from the surface of nucleosomal DNA after chromatin remodeling; acetylated (K25) by Gcn5p, altering replication stress tolerance; contains tandem bromodomains that recognize histone H3 acetylated on K14 (H3K14ac) by Gcn5p"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
91O15016    1216   TRI66_HUMAN Tripartite motif-containing prote...910.002     45.1     32     51GO:0016235; C:aggresome; IDA:HPA.::GO:0005634; C:nucleus; IDA:HPA.
GO:0008270; F:zinc ion binding; IEA:InterPro.
92Q5TJG6    803   BRD2_CANFA Bromodomain-containing protein 2 O...684     34.3     29     50GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
93Q7JJ13    798   BRD2_MOUSE Bromodomain-containing protein 2 O...683.6     34.3     29     50GO:0005737; C:cytoplasm; IDA:MGI.::GO:0005634; C:nucleus; IDA:MGI.
94Q6MGA9    798   BRD2_RAT Bromodomain-containing protein 2 OS=...683.7     34.3     29     50GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
95P25440    801   BRD2_HUMAN Bromodomain-containing protein 2 O...683.8     34.3     29     50GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004674; F:protein serine/threonine kinase activity; TAS:ProtInc.
GO:0007283; P:spermatogenesis; TAS:ProtInc.
96Q32S26    803   BRD2_BOVIN Bromodomain-containing protein 2 O...684     34.3     29     50GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
97Q9FT54    369   GTE6_ARATH Transcription factor GTE6 OS=Arabi...960.002     44.3     30     49GO:0005634; C:nucleus; IDA:TAIR.
GO:0004402; F:histone acetyltransferase activity; IDA:TAIR.
GO:0006338; P:chromatin remodeling; IDA:TAIR.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
98P51123    2129   TAF1_DROME Transcription initiation factor TF...1000.14     39.3     30     51GO:0005669; C:transcription factor TFIID complex; IDA:FlyBase.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0035174; F:histone serine kinase activity; IDA:FlyBase.::GO:0043565; F:sequence-specific DNA binding; IDA:FlyBase.::GO:0001129; F:TBP-class protein binding RNA polymerase II transcription factor activity involved in preinitiation complex assembly; IPI:FlyBase.::GO:0008134; F:transcription factor binding; IPI:FlyBase.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0016573; P:histone acetylation; IDA:FlyBase.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:FlyBase.::GO:0060261; P:positive regulation of transcription initiation from RNA polymerase II promoter; IDA:BHF-UCL.::GO:0046425; P:regulation of JAK-STAT cascade; IMP:FlyBase.::GO:0000117; P:regulation of transcription involved in G2/M-phase of mitotic cell cycle; IMP:FlyBase.
99A2AHJ4    1799   BRWD3_MOUSE Bromodomain and WD repeat-contain...2554     34.3     22     37
GO:0007010; P:cytoskeleton organization; ISS:UniProtKB.::GO:0008360; P:regulation of cell shape; ISS:UniProtKB.
100C6KTD2    6753   HKNMT_PLAF7 Putative histone-lysine N-methylt...570.003     44.7     37     58
GO:0018024; F:histone-lysine N-methyltransferase activity; IEA:EC.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
101Q8LRK9    1919   TAF1A_ARATH Transcription initiation factor T...640.004     43.9     34     58GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0009294; P:DNA mediated transformation; IMP:TAIR.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
102Q9ESU6    1400   BRD4_MOUSE Bromodomain-containing protein 4 O...644.9     34.3     33     48GO:0000794; C:condensed nuclear chromosome; IDA:MGI.::GO:0000790; C:nuclear chromatin; IDA:MGI.
GO:0003677; F:DNA binding; IDA:MGI.::GO:0005515; F:protein binding; IPI:MGI.
GO:0007059; P:chromosome segregation; IMP:MGI.::GO:0044154; P:histone H3-K14 acetylation; IMP:MGI.::GO:0043983; P:histone H4-K12 acetylation; IMP:MGI.::GO:0001833; P:inner cell mass cell proliferation; IMP:MGI.::GO:0043388; P:positive regulation of DNA binding; IDA:MGI.::GO:0006468; P:protein phosphorylation; IPI:MGI.
103O60885    1362   BRD4_HUMAN Bromodomain-containing protein 4 O...820.014     42.4     30     49GO:0000794; C:condensed nuclear chromosome; IDA:MGI.::GO:0005737; C:cytoplasm; IDA:HPA.
GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0044419; P:interspecies interaction between organisms; IEA:UniProtKB-KW.::GO:0010971; P:positive regulation of G2/M transition of mitotic cell cycle; IMP:MGI.::GO:0032968; P:positive regulation of transcription elongation from RNA polymerase II promoter; IMP:MGI.::GO:0000114; P:regulation of transcription involved in G1 phase of mitotic cell cycle; IMP:MGI.
104P87152    992   SPT7_SCHPO Transcriptional activator spt7 OS=...920.005     43.5     28     53GO:0000790; C:nuclear chromatin; IC:PomBase.::GO:0000124; C:SAGA complex; IDA:PomBase.
GO:0006338; P:chromatin remodeling; IC:PomBase.::GO:0016573; P:histone acetylation; ISS:PomBase.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006366; P:transcription from RNA polymerase II promoter; IC:PomBase.
105Q924W6    1242   TRI66_MOUSE Tripartite motif-containing prote...910.005     43.5     31     51GO:0010369; C:chromocenter; IDA:MGI.::GO:0005634; C:nucleus; IDA:MGI.
GO:0042803; F:protein homodimerization activity; IPI:MGI.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0045892; P:negative regulation of transcription, DNA-dependent; IDA:MGI.
106Q6PUA2    1786   TAF1B_ARATH Transcription initiation factor T...640.005     43.9     36     55GO:0016020; C:membrane; IDA:TAIR.::GO:0005669; C:transcription factor TFIID complex; TAS:TAIR.
GO:0003712; F:transcription cofactor activity; TAS:TAIR.
GO:0016573; P:histone acetylation; IMP:TAIR.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0009416; P:response to light stimulus; IEP:TAIR.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
107A8X0L9    1285   TBP7_CAEBR Tat-binding homolog 7 OS=Caenorhab...860.006     43.5     31     53
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
108Q55C84    1578   Y0170_DICDI Bromodomain-containing protein DD...780.007     43.5     33     51
GO:0005524; F:ATP binding; ISS:dictyBase.::GO:0004672; F:protein kinase activity; ISS:dictyBase.
109Q9UPN9    1127   TRI33_HUMAN E3 ubiquitin-protein ligase TRIM3...990.061     40.4     28     52GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0070410; F:co-SMAD binding; IPI:BHF-UCL.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0070412; F:R-SMAD binding; IPI:BHF-UCL.::GO:0008270; F:zinc ion binding; NAS:UniProtKB.
GO:0030514; P:negative regulation of BMP signaling pathway; IDA:UniProtKB.::GO:0045892; P:negative regulation of transcription, DNA-dependent; NAS:UniProtKB.::GO:0016567; P:protein ubiquitination; IDA:UniProtKB.::GO:0017015; P:regulation of transforming growth factor beta receptor signaling pathway; IDA:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
110Q56R14    1091   TRI33_XENLA E3 ubiquitin-protein ligase TRIM3...970.25     38.1     28     51GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
111Q99PP7    1142   TRI33_MOUSE E3 ubiquitin-protein ligase TRIM3...970.12     39.3     29     52GO:0005634; C:nucleus; IDA:MGI.
GO:0070410; F:co-SMAD binding; ISS:BHF-UCL.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0070412; F:R-SMAD binding; ISS:BHF-UCL.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0030514; P:negative regulation of BMP signaling pathway; ISS:UniProtKB.::GO:0016567; P:protein ubiquitination; ISS:UniProtKB.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0017015; P:regulation of transforming growth factor beta receptor signaling pathway; ISS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
112Q9NR48    2969   ASH1L_HUMAN Histone-lysine N-methyltransferas...790.014     42.4     29     51GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0005794; C:Golgi apparatus; IDA:HPA.::GO:0005634; C:nucleus; IDA:HPA.::GO:0005923; C:tight junction; TAS:ProtInc.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0018024; F:histone-lysine N-methyltransferase activity; IEA:EC.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0007267; P:cell-cell signaling; TAS:ProtInc.::GO:0006323; P:DNA packaging; TAS:ProtInc.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006366; P:transcription from RNA polymerase II promoter; TAS:ProtInc.
113Q6RI45    1802   BRWD3_HUMAN Bromodomain and WD repeat-contain...685.5     33.9     26     51
GO:0007010; P:cytoskeleton organization; IMP:UniProtKB.::GO:0008360; P:regulation of cell shape; IMP:UniProtKB.
114Q06488    889   RSC2_YEAST Chromatin structure-remodeling com...660.014     42.4     38     53GO:0016586; C:RSC complex; IDA:UniProtKB.
GO:0003677; F:DNA binding; IEA:InterPro.
GO:0043044; P:ATP-dependent chromatin remodeling; IDA:UniProtKB.::GO:0000724; P:double-strand break repair via homologous recombination; IMP:SGD.::GO:0006303; P:double-strand break repair via nonhomologous end joining; IPI:SGD.::GO:0006337; P:nucleosome disassembly; IDA:SGD.::GO:0006276; P:plasmid maintenance; IMP:UniProtKB.::GO:0042173; P:regulation of sporulation resulting in formation of a cellular spore; IMP:UniProtKB.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0007062; P:sister chromatid cohesion; IMP:SGD.::GO:0030435; P:sporulation resulting in formation of a cellular spore; IEA:UniProtKB-KW.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; IDA:SGD.
115Q9LS28    494   GTE12_ARATH Transcription factor GTE12 OS=Ara...580.016     42     40     53GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
116Q8H1D7    487   GTE5_ARATH Transcription factor GTE5, chlorop...640.021     41.6     38     48GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
117Q7ZUF2    631   BRD9_DANRE Bromodomain-containing protein 9 O...700.024     41.2     30     49
118Q6E2N3    1163   TRI33_DANRE E3 ubiquitin-protein ligase TRIM3...1162.6     35     25     41GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
119Q6NVM8    596   BRD9_XENTR Bromodomain-containing protein 9 O...590.031     40.8     32     53
120Q9HGP4    727   YK82_SCHPO Bromodomain-containing protein C63...590.032     41.2     36     54GO:0005634; C:nucleus; IDA:PomBase.
GO:0006338; P:chromatin remodeling; ISS:PomBase.
121Q67W65    1810   TAF1_ORYSJ Transcription initiation factor TF...560.034     41.2     32     54GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
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