Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YKL213C
Length:
715
Number of sequences:
5887
Description:
YKL213C DOA1 SGDID:S000001696, Chr XI from 34107-31960, Genome Release 64-1-1, reverse complement, Verified ORF, "WD repeat protein required for ubiquitin-mediated protein degradation, forms complex with Cdc48p, plays a role in controlling cellular ubiquitin concentration; also promotes efficient NHEJ in postdiauxic/stationary phase"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
841B3P4F8    498   WDR55_DROER WD repeat-containing protein 55 h...891.5     35.8     26     53
842A5DL92    453   YTM1_PICGU Ribosome biogenesis protein YTM1 O...1810.11     39.3     24     46GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
843Q4WP10    488   YTM1_ASPFU Ribosome biogenesis protein ytm1 O...710.91     36.6     31     52GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
844B0Y5V6    488   YTM1_ASPFC Ribosome biogenesis protein ytm1 O...710.91     36.6     31     52GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
845Q8BPN8    3032   DMXL2_MOUSE DmX-like protein 2 OS=Mus musculu...1240.091     40     24     44GO:0030054; C:cell junction; IEA:UniProtKB-KW.::GO:0030672; C:synaptic vesicle membrane; IEA:UniProtKB-SubCell.
846B4QTL6    498   WDR55_DROSI WD repeat-containing protein 55 h...890.63     37     27     53
847A2QEV8    337   EIF3I_ASPNC Eukaryotic translation initiation...850.094     39.3     28     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
848P93471    672   COP1_PEA E3 ubiquitin-protein ligase COP1 OS=...1460.099     39.7     27     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0009585; P:red, far-red light phototransduction; IEA:UniProtKB-KW.
849Q9DCJ1    326   LST8_MOUSE Target of rapamycin complex subuni...1056.1     33.5     27     41
GO:0030838; P:positive regulation of actin filament polymerization; IMP:MGI.::GO:0050731; P:positive regulation of peptidyl-tyrosine phosphorylation; IMP:MGI.::GO:0032314; P:regulation of Rac GTPase activity; IMP:MGI.
850Q2HJ56    500   PWP1_BOVIN Periodic tryptophan protein 1 homo...1630.1     39.7     24     40GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
851Q6CMA2    333   CIAO1_KLULA Probable cytosolic iron-sulfur pr...2590.1     39.3     24     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
852Q294Y7    503   WDR55_DROPS WD repeat-containing protein 55 h...850.11     39.3     29     54
853A6H603    1563   NWD1_MOUSE NACHT and WD repeat domain-contain...860.11     39.7     24     49
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
854B4M4W4    504   WDR55_DROVI WD repeat-containing protein 55 h...844.9     34.3     26     54
855Q64LD2    544   WDR25_HUMAN WD repeat-containing protein 25 O...1360.11     39.3     26     43
856A1CH75    488   YTM1_ASPCL Ribosome biogenesis protein ytm1 O...581     36.2     34     53GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
857Q07141    748   TLE4_RAT Transducin-like enhancer protein 4 O...1410.13     39.3     25     43GO:0005634; C:nucleus; IDA:RGD.
GO:0003714; F:transcription corepressor activity; NAS:RGD.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0016055; P:Wnt receptor signaling pathway; IEA:UniProtKB-KW.
858B4GMG4    503   WDR55_DROPE WD repeat-containing protein 55 h...850.13     39.3     29     54
859Q0UNC6    1044   HIR1_PHANO Protein HIR1 OS=(Glume blotch fung...1670.68     37     23     41GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003682; F:chromatin binding; IEA:InterPro.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
860Q2UGK1    487   YTM1_ASPOR Ribosome biogenesis protein ytm1 O...712.1     35.4     30     51GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
861Q54MP8    2200   Y5837_DICDI Bromodomain and WD repeat-contain...827.9     33.5     27     52
862A7EF03    335   EIF3I_SCLS1 Eukaryotic translation initiation...760.16     38.5     30     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
863Q759U7    461   LIS1_ASHGO Nuclear distribution protein PAC1 ...2510.14     38.9     25     41GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
864Q803V5    326   LST8_DANRE Target of rapamycin complex subuni...931.4     35.4     30     48GO:0005737; C:cytoplasm; ISS:UniProtKB.
865P27133    445   COROA_DICDI Coronin-A OS=Dictyostelium discoi...1330.14     38.9     27     44GO:0042995; C:cell projection; IDA:dictyBase.::GO:0009986; C:cell surface; IEA:UniProtKB-SubCell.::GO:0030864; C:cortical actin cytoskeleton; IBA:RefGenome.::GO:0001891; C:phagocytic cup; IDA:dictyBase.::GO:0045335; C:phagocytic vesicle; IDA:dictyBase.
GO:0051015; F:actin filament binding; IDA:dictyBase.
GO:0007015; P:actin filament organization; ISS:dictyBase.::GO:0006928; P:cellular component movement; IMP:dictyBase.::GO:0000910; P:cytokinesis; IMP:dictyBase.::GO:0006972; P:hyperosmotic response; IEP:dictyBase.::GO:0030835; P:negative regulation of actin filament depolymerization; IBA:RefGenome.::GO:0051126; P:negative regulation of actin nucleation; ISS:dictyBase.::GO:0006909; P:phagocytosis; IEP:dictyBase.::GO:0009617; P:response to bacterium; IEP:dictyBase.
866P53196    417   RPN14_YEAST 26S proteasome regulatory subunit...964.1     34.3     23     52GO:0005829; C:cytosol; IDA:SGD.::GO:0005634; C:nucleus; IDA:SGD.::GO:0000502; C:proteasome complex; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0070682; P:proteasome regulatory particle assembly; IMP:SGD.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IMP:SGD.
867Q5XFW8    322   SEC13_RAT Protein SEC13 homolog OS=Rattus nor...930.15     38.5     32     52GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0012507; C:ER to Golgi transport vesicle membrane; IEA:UniProtKB-SubCell.::GO:0031080; C:Nup107-160 complex; ISS:UniProtKB.
GO:0006888; P:ER to Golgi vesicle-mediated transport; IDA:MGI.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0015031; P:protein transport; IEA:UniProtKB-KW.
868Q5B563    309   SEC13_EMENI Protein transport protein sec13 O...3230.15     38.5     22     38GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0012507; C:ER to Golgi transport vesicle membrane; IEA:UniProtKB-SubCell.::GO:0005643; C:nuclear pore; IEA:UniProtKB-SubCell.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0015031; P:protein transport; IEA:UniProtKB-KW.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
869B4JSW8    503   WDR55_DROGR WD repeat-containing protein 55 h...885.5     33.9     27     47
870A6RUL1    335   EIF3I_BOTFB Eukaryotic translation initiation...760.18     38.5     30     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
871Q03177    834   YMZ2_YEAST WD repeat-containing protein YMR10...770.15     39.3     39     53
records
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