Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YKL213C
Length:
715
Number of sequences:
5887
Description:
YKL213C DOA1 SGDID:S000001696, Chr XI from 34107-31960, Genome Release 64-1-1, reverse complement, Verified ORF, "WD repeat protein required for ubiquitin-mediated protein degradation, forms complex with Cdc48p, plays a role in controlling cellular ubiquitin concentration; also promotes efficient NHEJ in postdiauxic/stationary phase"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
361A1CUD6    467   LIS11_ASPCL Nuclear distribution protein nudF...1051.1     36.2     30     49GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
362Q6C709    441   PRP46_YARLI Pre-mRNA-splicing factor PRP46 OS...2720.00004     50.4     23     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
363Q2HBX6    454   LIS11_CHAGB Nuclear distribution protein PAC1...1050.51     37.4     30     50GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
364Q29KQ0    419   WDR12_DROPS Ribosome biogenesis protein WDR12...1710.11     39.3     22     47GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0070545; C:PeBoW complex; ISS:UniProtKB.
GO:0000463; P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:UniProtKB.
365Q2U5Z8    650   MDV1_ASPOR Mitochondrial division protein 1 O...1070.088     39.7     26     50GO:0005741; C:mitochondrial outer membrane; IEA:UniProtKB-SubCell.
366Q94A40    1216   COPA1_ARATH Coatomer subunit alpha-1 OS=Arabi...3030.0000009     56.2     22     42GO:0030126; C:COPI vesicle coat; IEA:InterPro.::GO:0005829; C:cytosol; IDA:TAIR.::GO:0005886; C:plasma membrane; IDA:TAIR.
GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
367Q9VU65    391   POC1_DROME POC1 centriolar protein homolog OS...1210.033     40.8     26     50
GO:0051297; P:centrosome organization; IMP:FlyBase.
368C4R6H3    500   LIS1_PICPG Nuclear distribution protein PAC1 ...2200.0005     47     22     39GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
369Q75AV4    449   PFS2_ASHGO Polyadenylation factor subunit 2 O...2310.006     43.5     21     40GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007059; P:chromosome segregation; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
370Q9C1X0    297   YN55_SCHPO Uncharacterized WD repeat-containi...1490.0000009     54.7     27     50GO:0005829; C:cytosol; IDA:PomBase.::GO:0005634; C:nucleus; IDA:PomBase.::GO:0043234; C:protein complex; NAS:PomBase.
GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.
371Q12024    460   YTM1_YEAST Ribosome biogenesis protein YTM1 O...1510.037     40.8     25     40GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0070545; C:PeBoW complex; IDA:SGD.::GO:0030687; C:preribosome, large subunit precursor; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0051276; P:chromosome organization; IGI:SGD.::GO:0042273; P:ribosomal large subunit biogenesis; IMP:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
372A6ZPA9    460   YTM1_YEAS7 Ribosome biogenesis protein YTM1 O...1510.037     40.8     25     40GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
373P07834    779   CDC4_YEAST Cell division control protein 4 OS...1010.003     44.7     32     49GO:0016363; C:nuclear matrix; IDA:SGD.::GO:0043224; C:nuclear SCF ubiquitin ligase complex; IDA:SGD.
GO:0043130; F:ubiquitin binding; IDA:SGD.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0000082; P:G1/S transition of mitotic cell cycle; IMP:SGD.::GO:0000086; P:G2/M transition of mitotic cell cycle; IGI:SGD.::GO:0007126; P:meiosis; IMP:SGD.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0042787; P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process; IDA:SGD.::GO:0031146; P:SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; IDA:SGD.::GO:0030435; P:sporulation resulting in formation of a cellular spore; IEA:UniProtKB-KW.
374Q9UNX4    943   WDR3_HUMAN WD repeat-containing protein 3 OS=...3090.000001     55.8     24     41GO:0031965; C:nuclear membrane; IDA:HPA.::GO:0005730; C:nucleolus; IDA:HPA.
375Q8N0X2    631   SPG16_HUMAN Sperm-associated antigen 16 prote...890.55     37.4     27     46GO:0035085; C:cilium axoneme; ISS:UniProtKB.::GO:0035086; C:flagellar axoneme; IEA:UniProtKB-SubCell.
GO:0042384; P:cilium assembly; ISS:UniProtKB.
376Q9C827    926   COB22_ARATH Coatomer subunit beta'-2 OS=Arabi...1490.002     45.4     28     45GO:0030663; C:COPI coated vesicle membrane; IEA:UniProtKB-SubCell.::GO:0005829; C:cytosol; IDA:TAIR.::GO:0030117; C:membrane coat; IEA:InterPro.
GO:0005488; F:binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
377Q6P0D9    330   CIAO1_DANRE Probable cytosolic iron-sulfur pr...2730.84     36.2     23     39
GO:0016226; P:iron-sulfur cluster assembly; ISS:UniProtKB.
378Q5RFF8    485   NLE1_PONAB Notchless protein homolog 1 OS=Pon...1810.023     41.6     25     42GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
379Q8K4P0    1330   WDR33_MOUSE pre-mRNA 3' end processing protei...2560.0003     48.1     26     41GO:0005581; C:collagen; IEA:UniProtKB-KW.::GO:0005634; C:nucleus; IDA:MGI.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
380O95170    752   CDRT1_HUMAN CMT1A duplicated region transcrip...1160.001     45.8     29     50
381Q6FKK3    457   YTM1_CANGA Ribosome biogenesis protein YTM1 O...2752.4     35     24     40GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
382Q9UMS4    504   PRP19_HUMAN Pre-mRNA-processing factor 19 OS=...1050.0008     46.2     29     47GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0016607; C:nuclear speck; IDA:BHF-UCL.::GO:0005819; C:spindle; IEA:UniProtKB-SubCell.::GO:0000151; C:ubiquitin ligase complex; IEA:InterPro.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0042802; F:identical protein binding; IPI:BHF-UCL.::GO:0034450; F:ubiquitin-ubiquitin ligase activity; IDA:MGI.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0000209; P:protein polyubiquitination; IDA:MGI.::GO:0000245; P:spliceosomal complex assembly; IMP:BHF-UCL.
383Q9P7I3    651   MDV1_SCHPO Mitochondrial division protein 1 O...2370.015     42.4     24     39GO:0030015; C:CCR4-NOT core complex; NAS:PomBase.::GO:0005741; C:mitochondrial outer membrane; ISS:PomBase.
GO:0051020; F:GTPase binding; NAS:PomBase.
GO:0000266; P:mitochondrial fission; ISS:PomBase.::GO:0000002; P:mitochondrial genome maintenance; ISS:PomBase.::GO:0006355; P:regulation of transcription, DNA-dependent; ISS:PomBase.::GO:0006354; P:transcription elongation, DNA-dependent; IC:PomBase.
384Q9C0J8    1336   WDR33_HUMAN pre-mRNA 3' end processing protei...2560.0003     48.1     26     41GO:0005581; C:collagen; IEA:UniProtKB-KW.::GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006301; P:postreplication repair; NAS:UniProtKB.::GO:0007283; P:spermatogenesis; NAS:UniProtKB.
385A1DP19    441   LIS1_NEOFI Nuclear distribution protein nudF ...1050.9     36.2     30     50GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
386Q9Y6I7    421   WSB1_HUMAN WD repeat and SOCS box-containing ...630.092     39.7     33     60GO:0005622; C:intracellular; IDA:LIFEdb.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0035556; P:intracellular signal transduction; IEA:InterPro.
387O43818    475   U3IP2_HUMAN U3 small nucleolar RNA-interactin...3200.000001     55.1     24     44GO:0030532; C:small nuclear ribonucleoprotein complex; TAS:ProtInc.::GO:0005732; C:small nucleolar ribonucleoprotein complex; TAS:ProtInc.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; TAS:ProtInc.
388A7TNS8    669   CAF4_VANPO CCR4-associated factor 4 homolog O...2760.000001     55.5     21     42GO:0005741; C:mitochondrial outer membrane; IEA:UniProtKB-SubCell.
389Q9CAA0    920   COB21_ARATH Coatomer subunit beta'-1 OS=Arabi...1490.0003     48.1     30     47GO:0030663; C:COPI coated vesicle membrane; IEA:UniProtKB-SubCell.::GO:0005829; C:cytosol; IDA:TAIR.::GO:0030117; C:membrane coat; IEA:InterPro.
GO:0005488; F:binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
390Q21215    325   GBLP_CAEEL Guanine nucleotide-binding protein...3180.000001     54.3     25     42GO:0030424; C:axon; IDA:WormBase.::GO:0044297; C:cell body; IDA:WormBase.::GO:0005813; C:centrosome; IDA:WormBase.::GO:0030426; C:growth cone; IDA:WormBase.::GO:0000776; C:kinetochore; IDA:WormBase.::GO:0005635; C:nuclear envelope; IDA:WormBase.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0048675; P:axon extension; IMP:WormBase.::GO:0051304; P:chromosome separation; IMP:WormBase.::GO:0000281; P:cytokinesis after mitosis; IMP:WormBase.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0040035; P:hermaphrodite genitalia development; IMP:WormBase.::GO:0008045; P:motor axon guidance; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0006997; P:nucleus organization; IMP:WormBase.::GO:0018991; P:oviposition; IMP:WormBase.::GO:0040038; P:polar body extrusion after meiotic divisions; IMP:WormBase.::GO:0040010; P:positive regulation of growth rate; IMP:WormBase.::GO:0040017; P:positive regulation of locomotion; IMP:WormBase.::GO:0033365; P:protein localization to organelle; IMP:WormBase.::GO:0030334; P:regulation of cell migration; IMP:WormBase.
391O54927    421   WSB1_MOUSE WD repeat and SOCS box-containing ...810.14     38.9     32     53
GO:0035556; P:intracellular signal transduction; IEA:InterPro.
records
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