Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YKL113C
Length:
382
Number of sequences:
5887
Description:
YKL113C RAD27 SGDID:S000001596, Chr XI from 225875-224727, Genome Release 64-1-1, reverse complement, Verified ORF, "5' to 3' exonuclease, 5' flap endonuclease, required for Okazaki fragment processing and maturation as well as for long-patch base-excision repair; member of the S. pombe RAD2/FEN1 family"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
211Q29FC1    754   GEN_DROPS Flap endonuclease GEN OS=Drosophila...2470.0000000000005     74.3     26     41GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0035312; F:5'-3' exodeoxyribonuclease activity; ISS:UniProtKB.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0008311; F:double-stranded DNA specific 3'-5' exodeoxyribonuclease activity; ISS:UniProtKB.::GO:0004520; F:endodeoxyribonuclease activity; ISS:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0008310; F:single-stranded DNA specific 3'-5' exodeoxyribonuclease activity; ISS:UniProtKB.
GO:0000737; P:DNA catabolic process, endonucleolytic; ISS:UniProtKB.::GO:0000738; P:DNA catabolic process, exonucleolytic; ISS:UniProtKB.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
212P35689    1170   ERCC5_MOUSE DNA repair protein complementing ...1050.000002     53.9     30     52GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003697; F:single-stranded DNA binding; IEA:InterPro.
GO:0006289; P:nucleotide-excision repair; IEA:InterPro.
213Q60GC1    836   EXO1_ORYSJ Exonuclease 1 OS=Oryza sativa subs...2710.000000000001     72.8     26     46GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
214Q196Y4    380   VF369_IIV3 Probable RAD2-like endonuclease 07...3220.000000000005     70.5     25     38GO:0042025; C:host cell nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:InterPro.
215Q803U7    806   EXO1_DANRE Exonuclease 1 OS=Danio rerio (Zebr...3030.000000000009     70.5     25     44GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0048256; F:flap endonuclease activity; ISS:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0045145; F:single-stranded DNA specific 5'-3' exodeoxyribonuclease activity; ISS:UniProtKB.
GO:0006310; P:DNA recombination; ISS:UniProtKB.::GO:0006298; P:mismatch repair; ISS:UniProtKB.
216P39875    702   EXO1_YEAST Exodeoxyribonuclease 1 OS=Saccharo...3330.00000000001     70.1     25     43GO:0005634; C:nucleus; IPI:SGD.
GO:0008409; F:5'-3' exonuclease activity; IDA:SGD.::GO:0017108; F:5'-flap endonuclease activity; IDA:SGD.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0031292; P:gene conversion at mating-type locus, DNA double-strand break processing; IMP:SGD.::GO:0000706; P:meiotic DNA double-strand break processing; IGI:SGD.::GO:0006298; P:mismatch repair; IMP:SGD.::GO:0031860; P:telomeric 3' overhang formation; IGI:SGD.
217Q9LPD2    599   GENL1_ARATH Flap endonuclease GEN-like 1 OS=A...2270.00000000003     68.6     28     44GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
218Q8W5R1    641   GENL2_ORYSJ Flap endonuclease GEN-like 2 OS=O...2760.0000000002     65.9     24     41GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
219Q24558    732   EXO1_DROME Exonuclease 1 OS=Drosophila melano...2610.00000007     58.2     26     43GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0051908; F:double-stranded DNA specific 5'-3' exodeoxyribonuclease activity; ISS:UniProtKB.::GO:0048256; F:flap endonuclease activity; ISS:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0045145; F:single-stranded DNA specific 5'-3' exodeoxyribonuclease activity; ISS:UniProtKB.
GO:0006310; P:DNA recombination; ISS:UniProtKB.::GO:0006298; P:mismatch repair; ISS:UniProtKB.
220Q9M2Z3    600   GENL2_ARATH Flap endonuclease GEN-like 2 OS=A...1920.000002     53.5     26     41GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
221P80194    834   DPO1_THECA DNA polymerase I, thermostable OS=...2570.0002     47.4     25     40
GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.::GO:0001882; F:nucleoside binding; IEA:InterPro.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
222P52028    834   DPO1T_THET8 DNA polymerase I, thermostable OS...2580.0004     46.2     24     40
GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.::GO:0001882; F:nucleoside binding; IEA:InterPro.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
223Q55971    986   DPO1_SYNY3 DNA polymerase I OS=Synechocystis ...2160.003     43.5     25     42GO:0005622; C:intracellular; IEA:InterPro.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
224P40028    759   YEN1_YEAST Holliday junction resolvase YEN1 O...450.003     43.5     49     56GO:0005737; C:cytoplasm; IDA:SGD.::GO:0005634; C:nucleus; IDA:SGD.
GO:0008821; F:crossover junction endodeoxyribonuclease activity; IDA:SGD.::GO:0003677; F:DNA binding; IEA:InterPro.
GO:0006281; P:DNA repair; IGI:SGD.
225P52026    876   DPO1_GEOSE DNA polymerase I OS=Geobacillus st...2400.009     42     24     41GO:0005622; C:intracellular; IEA:InterPro.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
226O32801    877   DPO1_LACLM DNA polymerase I OS=Lactococcus la...1310.028     40.4     29     48GO:0005622; C:intracellular; IEA:InterPro.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
227Q04957    877   DPO1_BACCA DNA polymerase I OS=Bacillus caldo...2390.062     39.3     25     40GO:0005622; C:intracellular; IEA:InterPro.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
228P59200    877   DPO1_STRR6 DNA polymerase I OS=Streptococcus ...2620.063     39.3     24     39GO:0005622; C:intracellular; IEA:InterPro.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
229P52027    956   DPO1_DEIRA DNA polymerase I OS=LMG 4051 / NBR...510.07     38.9     35     61
GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.::GO:0001882; F:nucleoside binding; IEA:InterPro.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
230O05949    867   DPO1_RICPR DNA polymerase I OS=Rickettsia pro...920.07     38.9     30     45
GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
231P59199    877   DPO1_STRPN DNA polymerase I OS=Streptococcus ...2620.075     38.9     24     39GO:0005622; C:intracellular; IEA:InterPro.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
232Q9RAA9    922   DPO1_RICFE DNA polymerase I OS=Rickettsia fel...1150.083     38.9     30     47
GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
233P43741    930   DPO1_HAEIN DNA polymerase I OS=Haemophilus in...2370.095     38.5     24     40GO:0005622; C:intracellular; IEA:InterPro.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
234O67550    289   EX53_AQUAE 5'-3' exonuclease OS=Aquifex aeoli...2390.1     37.7     26     43
GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:InterPro.
235O34996    880   DPO1_BACSU DNA polymerase I OS=Bacillus subti...620.12     38.1     37     56GO:0005622; C:intracellular; IEA:InterPro.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
236Q9RLA0    872   DPO1_RICTY DNA polymerase I OS=Rickettsia typ...920.13     38.1     30     46
GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
237Q9CDS1    877   DPO1_LACLA DNA polymerase I OS=lactis). GN=po...750.21     37.4     31     53GO:0005622; C:intracellular; IEA:InterPro.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
238Q9RLB6    921   DPO1_RICHE DNA polymerase I OS=Rickettsia hel...1150.4     36.6     28     47
GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
239Q1RH76    871   DPO1_RICBR DNA polymerase I OS=Rickettsia bel...1140.58     36.2     26     45
GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
240Q0STR2    310   MIAA_CLOPS tRNA dimethylallyltransferase OS=C...1150.62     35.4     22     44
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0052381; F:tRNA dimethylallyltransferase activity; IEA:EC.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
241Q0TRD4    310   MIAA_CLOP1 tRNA dimethylallyltransferase OS=C...1151.1     34.7     22     44
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0052381; F:tRNA dimethylallyltransferase activity; IEA:EC.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
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