Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YKL078W
Length:
735
Number of sequences:
5887
Description:
YKL078W DHR2 SGDID:S000001561, Chr XI from 288845-291052, Genome Release 64-1-1, Verified ORF, "Predominantly nucleolar DEAH-box ATP-dependent RNA helicase, required for 18S rRNA synthesis"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
31Q17R09    1227   PRP16_BOVIN Pre-mRNA-splicing factor ATP-depe...6571e-130     424     37     58GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
32Q8IX18    779   DHX40_HUMAN Probable ATP-dependent RNA helica...6603e-130     411     36     57
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
33Q5R864    779   DHX40_PONAB Probable ATP-dependent RNA helica...6603e-129     409     36     57
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
34Q6PE54    779   DHX40_MOUSE Probable ATP-dependent RNA helica...6604e-129     409     35     57
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
35Q9P774    1173   PRP16_SCHPO Pre-mRNA-splicing factor ATP-depe...6558e-129     417     37     60GO:0005681; C:spliceosomal complex; ISS:PomBase.
GO:0005524; F:ATP binding; IC:PomBase.::GO:0004004; F:ATP-dependent RNA helicase activity; ISS:PomBase.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0000350; P:generation of catalytic spliceosome for second transesterification step; ISS:PomBase.
36Q5XI69    779   DHX40_RAT Probable ATP-dependent RNA helicase...6812e-128     407     35     57
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
37P15938    1071   PRP16_YEAST Pre-mRNA-splicing factor ATP-depe...6642e-126     409     38     59GO:0071007; C:U2-type catalytic step 2 spliceosome; IDA:SGD.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008186; F:RNA-dependent ATPase activity; IDA:SGD.
GO:0000350; P:generation of catalytic spliceosome for second transesterification step; IMP:SGD.
38Q9HE06    647   YK99_SCHPO Putative pre-mRNA-splicing factor ...6454e-123     389     35     58GO:0005829; C:cytosol; IDA:PomBase.::GO:0005634; C:nucleus; IDA:PomBase.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004004; F:ATP-dependent RNA helicase activity; ISS:UniProtKB.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
39Q9BKQ8    732   DHX35_CAEEL Probable ATP-dependent RNA helica...6661e-121     387     36     56
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
40P45018    1304   HRPA_HAEIN ATP-dependent RNA helicase hrpA ho...6722e-101     345     34     55
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
41P43329    1300   HRPA_ECOLI ATP-dependent RNA helicase hrpA OS...6626e-99     338     34     54
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IMP:EcoCyc.
42O17438    455   DHX15_STRPU Putative pre-mRNA-splicing factor...4489e-96     311     40     59GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
43Q9HDY4    1183   YK16_SCHPO Putative ATP-dependent RNA helicas...6517e-84     293     32     50GO:0005730; C:nucleolus; IDA:PomBase.::GO:0032040; C:small-subunit processome; ISS:PomBase.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003724; F:RNA helicase activity; ISS:PomBase.
GO:0030490; P:maturation of SSU-rRNA; ISS:PomBase.
44Q14147    1143   DHX34_HUMAN Probable ATP-dependent RNA helica...5962e-82     289     35     50GO:0005622; C:intracellular; IEA:InterPro.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
45Q9DBV3    1145   DHX34_MOUSE Probable ATP-dependent RNA helica...5374e-82     288     35     51GO:0005622; C:intracellular; IEA:InterPro.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
46Q5XH12    748   DHX32_XENLA Putative pre-mRNA-splicing factor...6858e-82     281     29     51GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
47Q5ZI74    1231   DHX30_CHICK Putative ATP-dependent RNA helica...5052e-75     270     36     56GO:0042645; C:mitochondrial nucleoid; ISS:UniProtKB.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003682; F:chromatin binding; ISS:UniProtKB.::GO:0003725; F:double-stranded RNA binding; IEA:InterPro.
48Q8BZS9    744   DHX32_MOUSE Putative pre-mRNA-splicing factor...6956e-73     257     29     49GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
49P0CE10    1787   Y4102_ARATH Putative uncharacterized protein ...6661e-72     263     30     50GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
50Q7L2E3    1194   DHX30_HUMAN Putative ATP-dependent RNA helica...4876e-70     253     35     55GO:0042645; C:mitochondrial nucleoid; IDA:BHF-UCL.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003682; F:chromatin binding; IDA:UniProtKB.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
51Q5BJS0    1194   DHX30_RAT Putative ATP-dependent RNA helicase...4876e-70     253     35     55GO:0042645; C:mitochondrial nucleoid; ISS:UniProtKB.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003682; F:chromatin binding; ISS:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
52Q2NKY8    1220   DHX30_BOVIN Putative ATP-dependent RNA helica...4876e-70     253     35     55GO:0042645; C:mitochondrial nucleoid; ISS:UniProtKB.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003682; F:chromatin binding; ISS:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
53Q99PU8    1217   DHX30_MOUSE Putative ATP-dependent RNA helica...4877e-70     253     35     55GO:0042645; C:mitochondrial nucleoid; ISS:UniProtKB.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003682; F:chromatin binding; ISS:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
54Q7L7V1    743   DHX32_HUMAN Putative pre-mRNA-splicing factor...6949e-70     248     28     49GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
55Q5R607    1194   DHX30_PONAB Putative ATP-dependent RNA helica...4871e-69     252     35     55GO:0042645; C:mitochondrial nucleoid; ISS:UniProtKB.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003682; F:chromatin binding; ISS:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
56Q68FK8    1262   DHX9_XENLA ATP-dependent RNA helicase A-like ...5591e-69     253     33     51GO:0070937; C:CRD-mediated mRNA stability complex; ISS:UniProtKB.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003725; F:double-stranded RNA binding; IEA:InterPro.
57P37024    809   HRPB_ECOLI ATP-dependent RNA helicase hrpB OS...4374e-67     242     35     55
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
58O94536    1327   UCP12_SCHPO Putative ATP-dependent RNA helica...6992e-66     244     29     48GO:0005829; C:cytosol; IDA:PomBase.
GO:0005524; F:ATP binding; ISS:PomBase.::GO:0004004; F:ATP-dependent RNA helicase activity; ISS:PomBase.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
59B0XDC4    1396   SPNE_CULQU Probable ATP-dependent RNA helicas...5132e-66     244     32     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0031047; P:gene silencing by RNA; IEA:UniProtKB-KW.::GO:0007126; P:meiosis; IEA:UniProtKB-KW.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0007283; P:spermatogenesis; IEA:UniProtKB-KW.
60Q06698    1435   YL419_YEAST Putative ATP-dependent RNA helica...6664e-65     240     31     48GO:0005739; C:mitochondrion; IDA:SGD.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
61Q16JS8    1374   SPNE_AEDAE Probable ATP-dependent RNA helicas...5073e-64     237     33     52GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0031047; P:gene silencing by RNA; IEA:UniProtKB-KW.::GO:0007126; P:meiosis; IEA:UniProtKB-KW.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0007283; P:spermatogenesis; IEA:UniProtKB-KW.
records
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