Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YKL059C
Length:
441
Number of sequences:
5887
Description:
YKL059C MPE1 SGDID:S000001542, Chr XI from 329443-328118, Genome Release 64-1-1, reverse complement, Verified ORF, "Essential conserved subunit of CPF (cleavage and polyadenylation factor), plays a role in 3' end formation of mRNA via the specific cleavage and polyadenylation of pre-mRNA, contains a putative RNA-binding zinc knuckle motif"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
61P04593    512   GAG_HV1B5 Gag polyprotein OS=(HIV-1). GN=gag ...406.5     32.7     40     53GO:0005829; C:cytosol; TAS:Reactome.::GO:0010008; C:endosome membrane; TAS:Reactome.::GO:0030430; C:host cell cytoplasm; IEA:UniProtKB-SubCell.::GO:0042025; C:host cell nucleus; IEA:UniProtKB-SubCell.::GO:0020002; C:host cell plasma membrane; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0005198; F:structural molecule activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0046788; P:egress of virus within host cell; TAS:Reactome.::GO:0030260; P:entry into host cell; TAS:Reactome.::GO:0019047; P:provirus integration; TAS:Reactome.::GO:0006278; P:RNA-dependent DNA replication; TAS:Reactome.::GO:0019061; P:uncoating of virus; TAS:Reactome.
62P03347    512   GAG_HV1B1 Gag polyprotein OS=(HIV-1). GN=gag ...406.5     32.7     40     53GO:0005829; C:cytosol; TAS:Reactome.::GO:0010008; C:endosome membrane; TAS:Reactome.::GO:0030430; C:host cell cytoplasm; IEA:UniProtKB-SubCell.::GO:0042025; C:host cell nucleus; IEA:UniProtKB-SubCell.::GO:0020002; C:host cell plasma membrane; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0005198; F:structural molecule activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0046788; P:egress of virus within host cell; TAS:Reactome.::GO:0030260; P:entry into host cell; TAS:Reactome.::GO:0019047; P:provirus integration; TAS:Reactome.::GO:0006278; P:RNA-dependent DNA replication; TAS:Reactome.::GO:0019061; P:uncoating of virus; TAS:Reactome.
63Q09T00    422   GAG_HTL3P Gag polyprotein OS=Human T-cell leu...456.6     32.7     33     47GO:0019013; C:viral nucleocapsid; IEA:InterPro.
GO:0003676; F:nucleic acid binding; IEA:UniProtKB-KW.::GO:0005198; F:structural molecule activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0044419; P:interspecies interaction between organisms; IEA:UniProtKB-KW.::GO:0016032; P:viral reproduction; IEA:InterPro.
64Q0R5R4    422   GAG_HTL32 Gag polyprotein OS=Human T-cell leu...456.9     32.7     33     47GO:0019013; C:viral nucleocapsid; IEA:InterPro.
GO:0003676; F:nucleic acid binding; IEA:UniProtKB-KW.::GO:0005198; F:structural molecule activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0044419; P:interspecies interaction between organisms; IEA:UniProtKB-KW.::GO:0016032; P:viral reproduction; IEA:InterPro.
65P20873    504   GAG_HV1JR Gag polyprotein OS=(HIV-1). GN=gag ...527.3     32.7     38     46GO:0005829; C:cytosol; TAS:Reactome.::GO:0010008; C:endosome membrane; TAS:Reactome.::GO:0030430; C:host cell cytoplasm; IEA:UniProtKB-SubCell.::GO:0042025; C:host cell nucleus; IEA:UniProtKB-SubCell.::GO:0020002; C:host cell plasma membrane; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0005198; F:structural molecule activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0046788; P:egress of virus within host cell; TAS:Reactome.::GO:0030260; P:entry into host cell; TAS:Reactome.::GO:0019047; P:provirus integration; TAS:Reactome.::GO:0006278; P:RNA-dependent DNA replication; TAS:Reactome.::GO:0019061; P:uncoating of virus; TAS:Reactome.
66P12494    500   GAG_HV1J3 Gag polyprotein OS=(HIV-1). GN=gag ...568.4     32.3     36     48GO:0005829; C:cytosol; TAS:Reactome.::GO:0010008; C:endosome membrane; TAS:Reactome.::GO:0030430; C:host cell cytoplasm; IEA:UniProtKB-SubCell.::GO:0042025; C:host cell nucleus; IEA:UniProtKB-SubCell.::GO:0020002; C:host cell plasma membrane; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0005198; F:structural molecule activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0046788; P:egress of virus within host cell; TAS:Reactome.::GO:0030260; P:entry into host cell; TAS:Reactome.::GO:0019047; P:provirus integration; TAS:Reactome.::GO:0006278; P:RNA-dependent DNA replication; TAS:Reactome.::GO:0019061; P:uncoating of virus; TAS:Reactome.
67Q61382    470   TRAF4_MOUSE TNF receptor-associated factor 4 ...639     32.3     33     48GO:0005856; C:cytoskeleton; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; ISS:UniProtKB.::GO:0048471; C:perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.::GO:0005923; C:tight junction; IEA:UniProtKB-SubCell.
GO:0019901; F:protein kinase binding; IPI:UniProtKB.::GO:0004842; F:ubiquitin-protein ligase activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0046330; P:positive regulation of JNK cascade; ISS:UniProtKB.::GO:0045860; P:positive regulation of protein kinase activity; ISS:UniProtKB.::GO:0042981; P:regulation of apoptotic process; IEA:InterPro.::GO:0007585; P:respiratory gaseous exchange; IMP:MGI.::GO:0030323; P:respiratory tube development; IMP:MGI.::GO:0007165; P:signal transduction; IEA:InterPro.
68Q9BUZ4    470   TRAF4_HUMAN TNF receptor-associated factor 4 ...639.4     32.3     33     48GO:0005856; C:cytoskeleton; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IDA:UniProtKB.::GO:0048471; C:perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.::GO:0005923; C:tight junction; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; TAS:ProtInc.::GO:0004842; F:ubiquitin-protein ligase activity; IEA:InterPro.::GO:0050699; F:WW domain binding; IPI:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0046330; P:positive regulation of JNK cascade; IDA:UniProtKB.::GO:0090073; P:positive regulation of protein homodimerization activity; IDA:UniProtKB.::GO:0045860; P:positive regulation of protein kinase activity; IDA:UniProtKB.::GO:0042981; P:regulation of apoptotic process; IEA:InterPro.::GO:0007165; P:signal transduction; TAS:ProtInc.
69Q8VYA5    290   RSZ33_ARATH Serine/arginine-rich splicing fac...259.5     32     40     60GO:0016607; C:nuclear speck; IDA:TAIR.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0000245; P:spliceosomal complex assembly; TAS:TAIR.
records
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