Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
Home About FGC Use Cases Species List

UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YKL057C
Length:
1037
Number of sequences:
5887
Description:
YKL057C NUP120 SGDID:S000001540, Chr XI from 333969-330856, Genome Release 64-1-1, reverse complement, Verified ORF, "Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC); required for even distribution of NPCs around the nuclear envelope, involved in establishment of a normal nucleocytoplasmic concentration gradient of the GTPase Gsp1p; the Nup84 subcomplex has a role in transcription elongation"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P35729    1037   NU120_YEAST Nucleoporin NUP120 OS=Saccharomyc...10370     2119     100     100GO:0031965; C:nuclear membrane; IEA:UniProtKB-SubCell.::GO:0031080; C:Nup107-160 complex; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0005198; F:structural molecule activity; TAS:SGD.
GO:0050000; P:chromosome localization; IMP:SGD.::GO:0031990; P:mRNA export from nucleus in response to heat stress; IMP:SGD.::GO:0006609; P:mRNA-binding (hnRNP) protein import into nucleus; TAS:SGD.::GO:0006607; P:NLS-bearing substrate import into nucleus; TAS:SGD.::GO:0031081; P:nuclear pore distribution; IMP:SGD.::GO:0006999; P:nuclear pore organization; IMP:SGD.::GO:0000973; P:posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery; IMP:SGD.::GO:0006611; P:protein export from nucleus; TAS:SGD.::GO:0000055; P:ribosomal large subunit export from nucleus; IMP:SGD.::GO:0006610; P:ribosomal protein import into nucleus; TAS:SGD.::GO:0006407; P:rRNA export from nucleus; TAS:SGD.::GO:0006408; P:snRNA export from nucleus; TAS:SGD.::GO:0006608; P:snRNP protein import into nucleus; TAS:SGD.::GO:0006409; P:tRNA export from nucleus; TAS:SGD.
2O43044    1136   NU120_SCHPO Nucleoporin nup120 OS=Schizosacch...3330.13     40     23     43GO:0031965; C:nuclear membrane; IDA:PomBase.::GO:0031080; C:Nup107-160 complex; IDA:PomBase.
GO:0005515; F:protein binding; IPI:PomBase.
GO:0051301; P:cell division; IMP:PomBase.::GO:0000070; P:mitotic sister chromatid segregation; IMP:PomBase.::GO:0031081; P:nuclear pore distribution; IMP:PomBase.::GO:0016973; P:poly(A)+ mRNA export from nucleus; IMP:PomBase.
records
Previous ‹‹ ›› Next Total records: 2 1 - 2
Elimate unknown annotation:
Filter for keyword on hit description:
Select upper E value:
Select lower bit score:
Select lower %idenity value:
Select lower %positive value:
Taxonomic division:
Lower limit on hit length:
Lower limit on alignment length::