Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YKL018W
Length:
329
Number of sequences:
5887
Description:
YKL018W SWD2 SGDID:S000001501, Chr XI from 404102-405091, Genome Release 64-1-1, Verified ORF, "Subunit of the COMPASS (Set1C) complex, which methylates histone H3 on lys 4 and is involved in telomeric silencing; subunit of CPF (cleavage and polyadenylation factor), a complex involved in RNAP II transcription termination"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
241P49178    380   GBB_MAIZE Guanine nucleotide-binding protein ...1950.002     43.5     24     41
GO:0004871; F:signal transducer activity; IEA:UniProtKB-KW.
242Q8VZY6    379   FIE2_MAIZE Polycomb group protein FIE2 OS=Zea...650.002     43.5     31     55GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
243Q12788    808   TBL3_HUMAN Transducin beta-like protein 3 OS=...1251.5     34.3     19     36GO:0005730; C:nucleolus; IDA:HPA.::GO:0032040; C:small-subunit processome; IEA:InterPro.
GO:0005057; F:receptor signaling protein activity; TAS:ProtInc.
GO:0007199; P:G-protein signaling, coupled to cGMP nucleotide second messenger; TAS:ProtInc.::GO:0006364; P:rRNA processing; IEA:InterPro.
244Q5SQM0    1958   EMAL6_MOUSE Echinoderm microtubule-associated...1390.029     40     24     43GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.
245Q96JK2    942   DCAF5_HUMAN DDB1- and CUL4-associated factor ...3140.002     43.5     23     41GO:0080008; C:CUL4 RING ubiquitin ligase complex; IDA:UniProtKB.
GO:0016567; P:protein ubiquitination; IC:UniProtKB.
246P38129    798   TAF5_YEAST Transcription initiation factor TF...1750.61     35.8     23     42GO:0000124; C:SAGA complex; IDA:SGD.::GO:0046695; C:SLIK (SAGA-like) complex; IDA:SGD.::GO:0005669; C:transcription factor TFIID complex; IDA:SGD.
GO:0003682; F:chromatin binding; IDA:SGD.::GO:0042802; F:identical protein binding; IPI:IntAct.::GO:0032947; F:protein complex scaffold; IMP:SGD.::GO:0043130; F:ubiquitin binding; IDA:SGD.
GO:0016573; P:histone acetylation; IDA:SGD.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0051123; P:RNA polymerase II transcriptional preinitiation complex assembly; IC:SGD.
247P87060    775   POP1_SCHPO WD repeat-containing protein pop1 ...1040.002     43.5     25     50GO:0005634; C:nucleus; IDA:PomBase.::GO:0019005; C:SCF ubiquitin ligase complex; IDA:PomBase.
GO:0030674; F:protein binding, bridging; IPI:PomBase.
GO:0006995; P:cellular response to nitrogen starvation; IGI:PomBase.::GO:0000747; P:conjugation with cellular fusion; IMP:PomBase.::GO:0008054; P:cyclin catabolic process; IMP:PomBase.::GO:0007346; P:regulation of mitotic cell cycle; IC:PomBase.
248P14197    478   AAC3_DICDI WD repeat-containing protein AAC3 ...1147.7     32     20     45
249Q8C4J7    801   TBL3_MOUSE Transducin beta-like protein 3 OS=...1253     33.5     20     36GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0032040; C:small-subunit processome; IEA:InterPro.
GO:0006364; P:rRNA processing; IEA:InterPro.
250O94365    494   UTP15_SCHPO U3 small nucleolar RNA-associated...1250.006     42     26     44GO:0005829; C:cytosol; IDA:PomBase.::GO:0032040; C:small-subunit processome; ISS:PomBase.::GO:0005819; C:spindle; IDA:PomBase.::GO:0034455; C:t-UTP complex; ISS:PomBase.
GO:0030515; F:snoRNA binding; ISS:PomBase.
GO:0030490; P:maturation of SSU-rRNA; ISS:PomBase.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
251P73594    326   Y1409_SYNY3 Uncharacterized WD repeat-contain...3080.002     42.7     21     40GO:0030288; C:outer membrane-bounded periplasmic space; IDA:UniProtKB.
252P93107    606   PF20_CHLRE Flagellar WD repeat-containing pro...2520.002     43.1     20     39GO:0005929; C:cilium; IEA:UniProtKB-KW.::GO:0019861; C:flagellum; IEA:UniProtKB-SubCell.
253Q6C0U2    539   YD156_YARLI WD repeat-containing protein YALI...1290.002     43.1     26     48
254Q8BG40    658   KTNB1_MOUSE Katanin p80 WD40-containing subun...2320.002     43.1     22     39GO:0030424; C:axon; IDA:MGI.::GO:0005813; C:centrosome; IDA:MGI.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0045502; F:dynein binding; IDA:MGI.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.
255Q80T85    946   DCAF5_MOUSE DDB1- and CUL4-associated factor ...3160.003     43.1     23     42GO:0080008; C:CUL4 RING ubiquitin ligase complex; ISS:UniProtKB.::GO:0005739; C:mitochondrion; IDA:MGI.
256Q9R099    442   TBL2_MOUSE Transducin beta-like protein 2 OS=...1790.003     43.1     23     44
257Q9BVA0    655   KTNB1_HUMAN Katanin p80 WD40-containing subun...2320.003     43.1     22     39GO:0008352; C:katanin complex; TAS:UniProtKB.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0005886; C:plasma membrane; IDA:HPA.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0008017; F:microtubule binding; NAS:UniProtKB.::GO:0046982; F:protein heterodimerization activity; IPI:UniProtKB.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0007026; P:negative regulation of microtubule depolymerization; IMP:UniProtKB.::GO:0031117; P:positive regulation of microtubule depolymerization; IMP:UniProtKB.::GO:0006605; P:protein targeting; NAS:UniProtKB.
258B9LK98    359   MNMA_CHLSY tRNA-specific 2-thiouridylase MnmA...760.003     42.7     28     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0016783; F:sulfurtransferase activity; IEA:InterPro.::GO:0000049; F:tRNA binding; IEA:UniProtKB-KW.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
259A9WFH2    359   MNMA_CHLAA tRNA-specific 2-thiouridylase MnmA...760.003     42.7     28     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0016783; F:sulfurtransferase activity; IEA:InterPro.::GO:0000049; F:tRNA binding; IEA:UniProtKB-KW.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
260P90917    412   RBA1_CAEEL Probable histone-binding protein r...848.9     31.6     25     50GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:WormBase.
GO:0001708; P:cell fate specification; IMP:WormBase.::GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0001703; P:gastrulation with mouth forming first; IMP:WormBase.::GO:0040035; P:hermaphrodite genitalia development; IMP:WormBase.::GO:0040011; P:locomotion; IMP:WormBase.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0016246; P:RNA interference; IMP:WormBase.::GO:0045138; P:tail tip morphogenesis; IMP:WormBase.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
261D4AM37    663   SCONB_ARTBC Probable E3 ubiquitin ligase comp...1320.003     43.1     25     47
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
262O13046    1127   WDHD1_XENLA WD repeat and HMG-box DNA-binding...2430.003     43.1     22     41GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
263Q5ZIU8    657   KTNB1_CHICK Katanin p80 WD40-containing subun...2050.035     39.7     22     40GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0005815; C:microtubule organizing center; IEA:UniProtKB-SubCell.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.
264D4D8P3    663   SCONB_TRIVH Probable E3 ubiquitin ligase comp...1320.003     43.1     25     47
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
265Q9UUG8    598   TUP12_SCHPO Transcriptional repressor tup12 O...3090.003     43.1     20     37GO:0005829; C:cytosol; IDA:PomBase.::GO:0000790; C:nuclear chromatin; IC:PomBase.::GO:0043234; C:protein complex; NAS:PomBase.
GO:0042393; F:histone binding; IDA:PomBase.::GO:0003714; F:transcription corepressor activity; IDA:PomBase.
GO:0043156; P:chromatin remodeling in response to cation stress; IMP:PomBase.::GO:0006342; P:chromatin silencing; IMP:PomBase.::GO:0045014; P:negative regulation of transcription by glucose; IMP:PomBase.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
266O54927    421   WSB1_MOUSE WD repeat and SOCS box-containing ...1280.02     40     24     45
GO:0035556; P:intracellular signal transduction; IEA:InterPro.
267P93397    377   GBB1_TOBAC Guanine nucleotide-binding protein...1720.003     42.4     24     41
GO:0005515; F:protein binding; IPI:IntAct.::GO:0004871; F:signal transducer activity; IEA:UniProtKB-KW.
268Q8BHB4    942   WDR3_MOUSE WD repeat-containing protein 3 OS=...1350.005     42.4     22     41GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
269Q2TZG4    610   PFS2_ASPOR Polyadenylation factor subunit 2 O...1220.003     42.7     27     44GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007059; P:chromosome segregation; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
270Q8H0T9    837   KTNB1_ARATH Katanin p80 WD40 repeat-containin...2060.15     37.7     25     43GO:0080008; C:CUL4 RING ubiquitin ligase complex; ISS:TAIR.::GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:TAIR.
271B6QC56    459   LIS11_PENMQ Nuclear distribution protein nudF...2062.3     33.5     20     40GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
records
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