Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YKL009W
Length:
236
Number of sequences:
5887
Description:
YKL009W MRT4 SGDID:S000001492, Chr XI from 426242-426952, Genome Release 64-1-1, Verified ORF, "Protein involved in mRNA turnover and ribosome assembly, localizes to the nucleolus"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P33201    236   MRT4_YEAST mRNA turnover protein 4 OS=Sacchar...2362e-174     486     100     100GO:0005730; C:nucleolus; IDA:SGD.::GO:0005654; C:nucleoplasm; IDA:SGD.::GO:0030687; C:preribosome, large subunit precursor; IDA:SGD.
GO:0000956; P:nuclear-transcribed mRNA catabolic process; IMP:SGD.::GO:0000027; P:ribosomal large subunit assembly; IMP:SGD.::GO:0006364; P:rRNA processing; IMP:SGD.
2Q6FJ04    239   MRT4_CANGA mRNA turnover protein 4 homolog OS...2342e-139     398     79     91GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
3Q75DK9    236   MRT4_ASHGO mRNA turnover protein 4 homolog OS...2369e-129     370     72     86GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
4Q9USZ6    241   MRT4_SCHPO mRNA turnover protein 4 homolog OS...2292e-74     233     47     69GO:0005730; C:nucleolus; IDA:PomBase.
GO:0006402; P:mRNA catabolic process; ISS:PomBase.::GO:0000027; P:ribosomal large subunit assembly; ISS:PomBase.::GO:0006364; P:rRNA processing; ISS:PomBase.
5Q7S302    252   MRT4_NEUCR mRNA turnover protein 4 homolog OS...2343e-57     188     40     62GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
6Q9UKD2    239   MRT4_HUMAN mRNA turnover protein 4 homolog OS...2297e-49     166     39     59GO:0031965; C:nuclear membrane; IDA:HPA.::GO:0005730; C:nucleolus; IDA:HPA.
GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
7Q9D0I8    239   MRT4_MOUSE mRNA turnover protein 4 homolog OS...2359e-49     166     38     59GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
8A4FV84    239   MRT4_BOVIN mRNA turnover protein 4 homolog OS...2292e-48     165     39     58GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
9Q86HD3    223   MRT4_DICDI mRNA turnover protein 4 homolog OS...2282e-37     135     32     54GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
10P29764    321   RLA0_CHERU 60S acidic ribosomal protein P0 OS...2140.00000000000001     75.1     27     46GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0042254; P:ribosome biogenesis; IEA:InterPro.::GO:0006414; P:translational elongation; IEA:InterPro.
11O74864    312   RLA0_SCHPO 60S acidic ribosomal protein P0 OS...2070.0000000000001     72     26     49GO:0022626; C:cytosolic ribosome; NAS:PomBase.
GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0002182; P:cytoplasmic translational elongation; NAS:PomBase.::GO:0042254; P:ribosome biogenesis; IEA:InterPro.
12P57691    323   RLA03_ARATH 60S acidic ribosomal protein P0-3...1980.0000000000005     70.5     26     44GO:0022626; C:cytosolic ribosome; IDA:TAIR.::GO:0016020; C:membrane; IDA:TAIR.
GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0009651; P:response to salt stress; IEP:TAIR.::GO:0042254; P:ribosome biogenesis; IEA:InterPro.::GO:0006414; P:translational elongation; IEA:InterPro.
13Q42112    320   RLA02_ARATH 60S acidic ribosomal protein P0-2...1980.0000000000007     70.1     26     44GO:0009507; C:chloroplast; IDA:TAIR.::GO:0022626; C:cytosolic ribosome; IDA:TAIR.::GO:0005730; C:nucleolus; IDA:TAIR.::GO:0005886; C:plasma membrane; IDA:TAIR.::GO:0009506; C:plasmodesma; IDA:TAIR.
GO:0005507; F:copper ion binding; IDA:TAIR.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0046686; P:response to cadmium ion; IEP:TAIR.::GO:0009409; P:response to cold; IEP:TAIR.::GO:0009651; P:response to salt stress; IEP:TAIR.::GO:0010043; P:response to zinc ion; IEP:TAIR.::GO:0042254; P:ribosome biogenesis; IEA:InterPro.::GO:0006414; P:translational elongation; IEA:InterPro.
14P50346    320   RLA0_SOYBN 60S acidic ribosomal protein P0 OS...2140.000000000001     69.3     26     46GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0042254; P:ribosome biogenesis; IEA:InterPro.::GO:0006414; P:translational elongation; IEA:InterPro.
15O04204    317   RLA01_ARATH 60S acidic ribosomal protein P0-1...2140.000000000001     69.3     25     46GO:0022626; C:cytosolic ribosome; IDA:TAIR.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0042254; P:ribosome biogenesis; IEA:InterPro.::GO:0006414; P:translational elongation; IEA:InterPro.
16P50345    322   RLA0_LUPLU 60S acidic ribosomal protein P0 OS...2140.000000000003     68.2     26     46GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0042254; P:ribosome biogenesis; IEA:InterPro.::GO:0006414; P:translational elongation; IEA:InterPro.
17P19889    317   RLA0_DROME 60S acidic ribosomal protein P0 OS...2150.000000000005     67.4     30     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0005840; C:ribosome; IDA:FlyBase.
GO:0003906; F:DNA-(apurinic or apyrimidinic site) lyase activity; IEA:EC.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0042254; P:ribosome biogenesis; IEA:InterPro.::GO:0006414; P:translational elongation; IEA:InterPro.
18Q9U3U0    317   RLA0_CERCA 60S acidic ribosomal protein P0 OS...2150.00000000002     65.9     29     46GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0042254; P:ribosome biogenesis; IEA:InterPro.::GO:0006414; P:translational elongation; IEA:InterPro.
19Q8SRJ7    290   RLA0_ENCCU 60S acidic ribosomal protein P0 OS...2360.00000000006     64.3     25     44GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0042254; P:ribosome biogenesis; IEA:InterPro.
20Q8TX50    357   RLA0_METKA Acidic ribosomal protein P0 homolo...2060.00000000009     64.3     27     45GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0042254; P:ribosome biogenesis; IEA:InterPro.::GO:0006412; P:translation; IEA:InterPro.
21P39096    322   RLA0_LEICH 60S acidic ribosomal protein P0 OS...2160.0000000001     63.9     30     47GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0042254; P:ribosome biogenesis; IEA:InterPro.::GO:0006414; P:translational elongation; IEA:InterPro.
22Q9DG68    315   RLA0_RANSY 60S acidic ribosomal protein P0 OS...2040.0000000005     62     26     43GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0042254; P:ribosome biogenesis; IEA:InterPro.::GO:0006414; P:translational elongation; IEA:InterPro.
23P26796    323   RLA0_TRYCR 60S acidic ribosomal protein P0 OS...2150.0000000005     62     27     44GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0042254; P:ribosome biogenesis; IEA:InterPro.::GO:0006414; P:translational elongation; IEA:InterPro.
24O27717    336   RLA0_METTH Acidic ribosomal protein P0 homolo...2060.0000000005     62     27     47GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0042254; P:ribosome biogenesis; IEA:InterPro.::GO:0006412; P:translation; IEA:InterPro.
25P41095    319   RLA0_ORYSJ 60S acidic ribosomal protein P0 OS...2140.000000007     58.5     25     46
GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0042254; P:ribosome biogenesis; IEA:InterPro.::GO:0006414; P:translational elongation; IEA:InterPro.
26P39097    323   RLA0_LEIIN 60S acidic ribosomal protein P0 OS...2150.00000001     58.2     27     46GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0042254; P:ribosome biogenesis; IEA:InterPro.::GO:0006414; P:translational elongation; IEA:InterPro.
27O24573    319   RLA0_MAIZE 60S acidic ribosomal protein P0 OS...1960.00000001     57.8     27     46
GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0042254; P:ribosome biogenesis; IEA:InterPro.::GO:0006414; P:translational elongation; IEA:InterPro.
28P47826    316   RLA0_CHICK 60S acidic ribosomal protein P0 OS...2040.00000007     55.5     26     43GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0042254; P:ribosome biogenesis; IEA:InterPro.::GO:0006414; P:translational elongation; IEA:InterPro.
29P05388    317   RLA0_HUMAN 60S acidic ribosomal protein P0 OS...2040.0000001     54.7     25     43GO:0022625; C:cytosolic large ribosomal subunit; IDA:UniProtKB.::GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; TAS:ProtInc.::GO:0003735; F:structural constituent of ribosome; NAS:UniProtKB.
GO:0044419; P:interspecies interaction between organisms; IEA:UniProtKB-KW.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; TAS:Reactome.::GO:0042254; P:ribosome biogenesis; IEA:InterPro.::GO:0006614; P:SRP-dependent cotranslational protein targeting to membrane; TAS:Reactome.::GO:0006414; P:translational elongation; TAS:Reactome.::GO:0006413; P:translational initiation; TAS:Reactome.::GO:0006415; P:translational termination; TAS:Reactome.::GO:0019083; P:viral transcription; TAS:Reactome.
30Q95140    318   RLA0_BOVIN 60S acidic ribosomal protein P0 OS...2040.0000001     54.7     25     43GO:0005634; C:nucleus; ISS:UniProtKB.::GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0042254; P:ribosome biogenesis; IEA:InterPro.::GO:0006414; P:translational elongation; IEA:InterPro.
31Q29214    318   RLA0_PIG 60S acidic ribosomal protein P0 OS=S...2040.0000001     54.7     25     43GO:0005634; C:nucleus; ISS:UniProtKB.::GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0042254; P:ribosome biogenesis; IEA:InterPro.::GO:0006414; P:translational elongation; IEA:InterPro.
records
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