Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YJR093C
Length:
327
Number of sequences:
5887
Description:
YJR093C FIP1 SGDID:S000003853, Chr X from 604203-603220, Genome Release 64-1-1, reverse complement, Verified ORF, "Subunit of cleavage polyadenylation factor (CPF), interacts directly with poly(A) polymerase (Pap1p) to regulate its activity; bridging factor that links Pap1p and the CPF complex via Yth1p"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P45976    327   FIP1_YEAST Pre-mRNA polyadenylation factor FI...3270     662     100     100GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; IDA:SGD.
GO:0030674; F:protein binding, bridging; IMP:SGD.
GO:0006379; P:mRNA cleavage; IDA:SGD.::GO:0006378; P:mRNA polyadenylation; IDA:SGD.
2Q6FJ55    327   FIP1_CANGA Pre-mRNA polyadenylation factor FI...3252e-65     215     43     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
3Q751K8    323   FIP1_ASHGO Pre-mRNA polyadenylation factor FI...2895e-43     156     42     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
4Q6CPC3    295   FIP1_KLULA Pre-mRNA polyadenylation factor FI...2582e-42     154     41     54GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
5Q6BGR9    328   FIP1_DEBHA Pre-mRNA polyadenylation factor FI...731e-19     90.5     49     74GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
6Q5AGC1    326   FIP1_CANAL Pre-mRNA polyadenylation factor FI...891e-18     88.2     45     70GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0042493; P:response to drug; IMP:CGD.
7Q09801    344   FIP1X_SCHPO Pre-mRNA polyadenylation factor f...1042e-17     85.1     41     55GO:0005829; C:cytosol; IDA:PomBase.::GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; IDA:PomBase.
GO:0006379; P:mRNA cleavage; ISS:PomBase.::GO:0006378; P:mRNA polyadenylation; ISS:PomBase.
8Q6C784    221   FIP1_YARLI Pre-mRNA polyadenylation factor FI...714e-17     82     48     70GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
9Q5XJD3    570   FIP1_DANRE Pre-mRNA 3'-end-processing factor ...750.0000000000001     75.1     44     61GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
10Q5RAA7    588   FIP1_PONAB Pre-mRNA 3'-end-processing factor ...1010.0000000000005     73.2     40     50GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
11Q6UN15    594   FIP1_HUMAN Pre-mRNA 3'-end-processing factor ...1010.0000000000006     72.8     40     50
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
12Q7SAX8    423   FIP1_NEUCR Pre-mRNA polyadenylation factor fi...790.000000000003     70.5     46     65GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
13Q4IF44    328   FIP1_GIBZE Pre-mRNA polyadenylation factor FI...890.0000000003     64.3     38     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
14Q4WM95    338   FIP1_ASPFU Pre-mRNA polyadenylation factor fi...730.0000000005     63.5     40     64GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
15Q5BAJ7    327   FIP1_EMENI Pre-mRNA polyadenylation factor fi...1090.0000000006     63.2     29     53GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
16Q5U317    536   FIP1_RAT Pre-mRNA 3'-end-processing factor FI...1650.0000001     56.6     28     39GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
17Q29482    449   CLUS_HORSE Clusterin OS=Equus caballus (Horse...1010.04     39.3     29     46GO:0042583; C:chromaffin granule; IEA:UniProtKB-SubCell.::GO:0005829; C:cytosol; IEA:UniProtKB-SubCell.::GO:0005783; C:endoplasmic reticulum; IEA:UniProtKB-SubCell.::GO:0005792; C:microsome; IEA:UniProtKB-SubCell.::GO:0031966; C:mitochondrial membrane; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0048471; C:perinuclear region of cytoplasm; ISS:UniProtKB.::GO:0034366; C:spherical high-density lipoprotein particle; ISS:UniProtKB.
GO:0051787; F:misfolded protein binding; ISS:UniProtKB.::GO:0031625; F:ubiquitin protein ligase binding; ISS:UniProtKB.
GO:0008219; P:cell death; IEA:InterPro.::GO:0061077; P:chaperone-mediated protein folding; ISS:UniProtKB.::GO:0008629; P:induction of apoptosis by intracellular signals; ISS:UniProtKB.::GO:0043066; P:negative regulation of apoptotic process; ISS:UniProtKB.::GO:0032463; P:negative regulation of protein homooligomerization; ISS:UniProtKB.::GO:2001244; P:positive regulation of intrinsic apoptotic signaling pathway; ISS:UniProtKB.::GO:0051092; P:positive regulation of NF-kappaB transcription factor activity; ISS:UniProtKB.::GO:0032436; P:positive regulation of proteasomal ubiquitin-dependent protein catabolic process; ISS:UniProtKB.::GO:2000060; P:positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process; ISS:UniProtKB.::GO:0050821; P:protein stabilization; ISS:UniProtKB.::GO:0051788; P:response to misfolded protein; ISS:UniProtKB.
18A0LV27    879   IF2_ACIC1 Translation initiation factor IF-2 ...391.8     34.3     41     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005525; F:GTP binding; IEA:UniProtKB-KW.::GO:0003924; F:GTPase activity; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
19Q0P5W1    1427   VPS8_MOUSE Vacuolar protein sorting-associate...723.7     33.1     32     51
GO:0008270; F:zinc ion binding; IEA:InterPro.
20Q8N3P4    1428   VPS8_HUMAN Vacuolar protein sorting-associate...725.1     32.7     32     51
GO:0008270; F:zinc ion binding; IEA:InterPro.
21O25629    492   FTSA_HELPY Cell division protein FtsA OS=pylo...897.2     32     28     46
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0008360; P:regulation of cell shape; IEA:UniProtKB-KW.
records
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