Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YJR027W
Length:
1755
Number of sequences:
5887
Description:
YJR027W YJR027W SGDID:S000003788, Chr X from 472760-474061,474063-478028, Genome Release 64-1-1, transposable_element_gene, "Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
61P0CX68    440   YL11A_YEAST Transposon Ty1-LR1 Gag polyprotei...4380     884     98     98GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
62P0CX67    440   YG13A_YEAST Transposon Ty1-GR3 Gag polyprotei...4380     884     98     98GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
63P0CX66    440   YE12A_YEAST Transposon Ty1-ER2 Gag polyprotei...4380     884     98     98GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
64P0CX65    440   YD14A_YEAST Transposon Ty1-DR5 Gag polyprotei...4380     884     98     98GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
65P0CX58    440   YP12A_YEAST Transposon Ty1-PR1 Gag polyprotei...4380     884     98     98GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
66P0CX57    440   YA11A_YEAST Transposon Ty1-A Gag polyprotein ...4380     884     98     98GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
67Q03856    440   YD11A_YEAST Transposon Ty1-DR1 Gag polyprotei...4350     883     98     99GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
68P0CX60    440   YP13A_YEAST Transposon Ty1-PR2 Gag polyprotei...4380     882     97     98GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
69P0CX59    440   YO12A_YEAST Transposon Ty1-OR Gag polyprotein...4380     882     97     98GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
70Q12441    440   YD12A_YEAST Transposon Ty1-DR3 Gag polyprotei...4380     881     97     98GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
71Q12217    440   YB12A_YEAST Transposon Ty1-BR Gag polyprotein...4380     880     97     98GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
72Q04706    440   YM11A_YEAST Transposon Ty1-ML1 Gag polyprotei...4380     877     97     98GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
73Q12470    440   YN12A_YEAST Transposon Ty1-NL2 Gag polyprotei...4380     862     96     97GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
74P0C2I4    478   YH11A_YEAST Transposon Ty1-H Gag polyprotein ...4760     860     90     90GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
75Q12391    440   YN11A_YEAST Transposon Ty1-NL1 Gag polyprotei...4350     758     85     89GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
76Q03964    440   YD17A_YEAST Transposon Ty1-DR2 Gag polyprotei...4350     696     79     86GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
77Q04215    440   YM13A_YEAST Transposon Ty1-MR1 Gag polyprotei...4350     694     79     85GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
78Q12266    440   YB11A_YEAST Transposon Ty1-BL Gag polyprotein...4350     689     79     85GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
79Q12439    438   YO21A_YEAST Transposon Ty2-OR1 Gag polyprotei...4354e-127     411     51     66GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
80Q99303    438   YD23A_YEAST Transposon Ty2-DR3 Gag polyprotei...4355e-127     410     50     66GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
81P0C2J6    438   YL22A_YEAST Transposon Ty2-LR2 Gag polyprotei...4359e-127     410     50     66GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
82Q12260    438   YB21A_YEAST Transposon Ty2-B Gag polyprotein ...4352e-126     409     50     66GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
83Q03483    438   YD22A_YEAST Transposon Ty2-DR2 Gag polyprotei...4353e-126     408     50     66GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
84P25383    438   YC21A_YEAST Transposon Ty2-C Gag polyprotein ...4354e-126     408     50     66GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:InterPro.
85Q12392    438   YD21A_YEAST Transposon Ty2-DR1 Gag polyprotei...4357e-126     407     51     66GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
86Q12293    438   YO22A_YEAST Transposon Ty2-OR2 Gag polyprotei...4351e-125     406     50     66GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
87P0C2J4    438   YL21A_YEAST Transposon Ty2-LR1 Gag polyprotei...4352e-125     406     50     66GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
88P0CX62    438   YG22A_YEAST Transposon Ty2-GR2 Gag polyprotei...4352e-125     406     50     66GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
89P0CX61    438   YF21A_YEAST Transposon Ty2-F Gag polyprotein ...4352e-125     406     50     66GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
90P0C2J2    438   YG21A_YEAST Transposon Ty2-GR1 Gag polyprotei...4353e-125     405     50     65GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
91P0C2J7    1802   YH41B_YEAST Transposon Ty4-H Gag-Pol polyprot...2957e-32     140     31     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004190; F:aspartic-type endopeptidase activity; IEA:UniProtKB-KW.::GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.::GO:0004523; F:ribonuclease H activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003964; F:RNA-directed DNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0015074; P:DNA integration; IEA:UniProtKB-KW.::GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006508; P:proteolysis; IEA:UniProtKB-KW.::GO:0032196; P:transposition; IEA:UniProtKB-KW.::GO:0046797; P:viral procapsid maturation; IEA:UniProtKB-KW.
records
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