Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YJL140W
Length:
221
Number of sequences:
5887
Description:
YJL140W RPB4 SGDID:S000003676, Chr X from 150961-151626, Genome Release 64-1-1, Verified ORF, "RNA polymerase II subunit B32; forms two subunit dissociable complex with Rpb7p; involved in recruitment of 3'-end processing factors to transcribing RNA polymerase II complex and in export of mRNA to cytoplasm under stress conditions; also involved in translation initiation"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P20433    221   RPB4_YEAST DNA-directed RNA polymerase II sub...2214e-158     444     100     100GO:0000932; C:cytoplasmic mRNA processing body; IDA:SGD.::GO:0005665; C:DNA-directed RNA polymerase II, core complex; IDA:SGD.
GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0031369; F:translation initiation factor binding; IPI:SGD.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0031990; P:mRNA export from nucleus in response to heat stress; IMP:SGD.::GO:0000288; P:nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; IMP:SGD.::GO:0045948; P:positive regulation of translational initiation; IMP:SGD.::GO:0034402; P:recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex; IMP:SGD.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; IDA:SGD.
2O74825    135   RPB4_SCHPO DNA-directed RNA polymerase II sub...770.000000000000006     72.8     49     65GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; TAS:PomBase.
GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:PomBase.
GO:0000920; P:cytokinetic cell separation; IMP:PomBase.
3Q9D7M8    142   RPB4_MOUSE DNA-directed RNA polymerase II sub...680.0000000000002     68.6     47     69GO:0005665; C:DNA-directed RNA polymerase II, core complex; ISS:UniProtKB.
GO:0003899; F:DNA-directed RNA polymerase activity; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0006366; P:transcription from RNA polymerase II promoter; ISS:UniProtKB.
4O15514    142   RPB4_HUMAN DNA-directed RNA polymerase II sub...680.0000000000002     68.6     47     69GO:0005665; C:DNA-directed RNA polymerase II, core complex; IDA:UniProtKB.
GO:0003899; F:DNA-directed RNA polymerase activity; IMP:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0006370; P:mRNA capping; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0050434; P:positive regulation of viral transcription; TAS:Reactome.::GO:0006468; P:protein phosphorylation; IDA:GOC.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; TAS:Reactome.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; TAS:Reactome.::GO:0006283; P:transcription-coupled nucleotide-excision repair; TAS:Reactome.::GO:0016032; P:viral reproduction; TAS:Reactome.
5Q54S04    155   RPB4_DICDI DNA-directed RNA polymerase II sub...740.00000000002     63.2     46     65GO:0005737; C:cytoplasm; IDA:dictyBase.::GO:0005665; C:DNA-directed RNA polymerase II, core complex; ISS:dictyBase.
GO:0003899; F:DNA-directed RNA polymerase activity; IGI:dictyBase.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0006366; P:transcription from RNA polymerase II promoter; IGI:dictyBase.
6Q9VEA5    139   RPB4_DROME DNA-directed RNA polymerase II 16 ...770.00000000005     62     39     61GO:0005671; C:Ada2/Gcn5/Ada3 transcription activator complex; IDA:FlyBase.::GO:0005665; C:DNA-directed RNA polymerase II, core complex; IDA:UniProtKB.::GO:0005700; C:polytene chromosome; IDA:FlyBase.
GO:0003682; F:chromatin binding; IDA:FlyBase.::GO:0003899; F:DNA-directed RNA polymerase activity; IDA:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:FlyBase.
GO:0008283; P:cell proliferation; IDA:FlyBase.::GO:0043966; P:histone H3 acetylation; IDA:FlyBase.::GO:0043967; P:histone H4 acetylation; IDA:FlyBase.::GO:0007095; P:mitotic cell cycle G2/M transition DNA damage checkpoint; IGI:FlyBase.::GO:0006366; P:transcription from RNA polymerase II promoter; IDA:UniProtKB.
7Q97FE0    225   MCAT_CLOAB Probable manganese catalase OS=571...381     33.5     42     61
GO:0004096; F:catalase activity; IEA:EC.::GO:0046914; F:transition metal ion binding; IEA:InterPro.
8Q8JG38    817   FGFR2_DANRE Fibroblast growth factor receptor...861.1     33.9     29     44GO:0016023; C:cytoplasmic membrane-bounded vesicle; IEA:UniProtKB-SubCell.::GO:0005794; C:Golgi apparatus; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0005007; F:fibroblast growth factor-activated receptor activity; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0008284; P:positive regulation of cell proliferation; IEA:InterPro.
9E1BJD1    531   SMRD2_BOVIN SWI/SNF-related matrix-associated...731.7     33.1     32     56
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
10Q99JR8    531   SMRD2_MOUSE SWI/SNF-related matrix-associated...731.9     33.1     32     56
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
11Q92925    531   SMRD2_HUMAN SWI/SNF-related matrix-associated...732     33.1     32     56GO:0016514; C:SWI/SNF complex; IDA:UniProtKB.
GO:0003713; F:transcription coactivator activity; NAS:UniProtKB.
GO:0006338; P:chromatin remodeling; IDA:BHF-UCL.::GO:0006337; P:nucleosome disassembly; IDA:BHF-UCL.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; NAS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
12O54772    531   SMRD2_RAT SWI/SNF-related matrix-associated a...732     33.1     32     56
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
13Q9YC19    736   EF2_AERPE Elongation factor 2 OS=100138 / K1)...882.6     32.7     28     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005525; F:GTP binding; IEA:UniProtKB-KW.::GO:0003924; F:GTPase activity; IEA:InterPro.::GO:0003746; F:translation elongation factor activity; IEA:UniProtKB-KW.
14Q03364    813   FGFR2_XENLA Fibroblast growth factor receptor...903.8     32.3     20     47GO:0016023; C:cytoplasmic membrane-bounded vesicle; IEA:UniProtKB-SubCell.::GO:0005794; C:Golgi apparatus; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0005007; F:fibroblast growth factor-activated receptor activity; IEA:InterPro.
GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0008284; P:positive regulation of cell proliferation; IEA:InterPro.
15B7HMG6    443   SDHD_BACC7 Probable D-serine dehydratase OS=B...337.3     31.2     48     70
GO:0008721; F:D-serine ammonia-lyase activity; IEA:EC.::GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro.
GO:0046416; P:D-amino acid metabolic process; IEA:InterPro.
16B7HID8    443   SDHD_BACC4 Probable D-serine dehydratase OS=B...337.3     31.2     48     70
GO:0008721; F:D-serine ammonia-lyase activity; IEA:EC.::GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro.
GO:0046416; P:D-amino acid metabolic process; IEA:InterPro.
17Q6HKG3    446   SDHD_BACHK Probable D-serine dehydratase OS=B...337.5     31.2     48     70
GO:0008721; F:D-serine ammonia-lyase activity; IEA:EC.::GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro.
GO:0046416; P:D-amino acid metabolic process; IEA:InterPro.
18Q63D23    446   SDHD_BACCZ Probable D-serine dehydratase OS=B...337.5     31.2     48     70
GO:0008721; F:D-serine ammonia-lyase activity; IEA:EC.::GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro.
GO:0046416; P:D-amino acid metabolic process; IEA:InterPro.
19A9VPH9    445   SDHD_BACWK Probable D-serine dehydratase OS=B...337.7     31.2     48     70
GO:0008721; F:D-serine ammonia-lyase activity; IEA:EC.::GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro.
GO:0046416; P:D-amino acid metabolic process; IEA:InterPro.
20Q81S85    446   SDHD_BACAN Probable D-serine dehydratase OS=B...337.9     31.2     48     70
GO:0008721; F:D-serine ammonia-lyase activity; IEA:EC.::GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro.
GO:0046416; P:D-amino acid metabolic process; IEA:InterPro.
21C3L7G5    446   SDHD_BACAC Probable D-serine dehydratase OS=B...337.9     31.2     48     70
GO:0008721; F:D-serine ammonia-lyase activity; IEA:EC.::GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro.
GO:0046416; P:D-amino acid metabolic process; IEA:InterPro.
22Q81F73    443   SDHD_BACCR Probable D-serine dehydratase OS=B...338.6     30.8     48     70
GO:0008721; F:D-serine ammonia-lyase activity; IEA:EC.::GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro.
GO:0046416; P:D-amino acid metabolic process; IEA:InterPro.
23Q01W31    1001   IF2_SOLUE Translation initiation factor IF-2 ...379.9     30.8     32     68GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005525; F:GTP binding; IEA:UniProtKB-KW.::GO:0003924; F:GTPase activity; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
records
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