Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YJL006C
Length:
323
Number of sequences:
5887
Description:
YJL006C CTK2 SGDID:S000003543, Chr X from 424109-423138, Genome Release 64-1-1, reverse complement, Verified ORF, "Beta subunit of C-terminal domain kinase I (CTDK-I), which phosphorylates both RNA pol II subunit Rpo21p to affect transcription and pre-mRNA 3' end processing, and ribosomal protein Rps2p to increase translational fidelity"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
31Q8W5S1    336   CCH11_ARATH Cyclin-H1-1 OS=Arabidopsis thalia...1701.1     34.7     22     42GO:0005737; C:cytoplasm; IDA:TAIR.::GO:0005675; C:holo TFIIH complex; IEA:InterPro.
GO:0004672; F:protein kinase activity; IDA:TAIR.::GO:0019901; F:protein kinase binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0000079; P:regulation of cyclin-dependent protein kinase activity; IEA:InterPro.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.
32Q9NHP7    293   TF2B_DROVI Transcription initiation factor II...1991.2     34.3     17     44GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003743; F:translation initiation factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006352; P:transcription initiation, DNA-dependent; IEA:InterPro.
33Q9AS36    427   CCL11_ORYSJ Cyclin-L1-1 OS=Oryza sativa subsp...2001.4     34.3     21     40
GO:0019901; F:protein kinase binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0000079; P:regulation of cyclin-dependent protein kinase activity; IEA:InterPro.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
34P24863    283   CCNC_HUMAN Cyclin-C OS=Homo sapiens (Human). ...1752.8     33.1     24     43GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; IEA:InterPro.
GO:0019901; F:protein kinase binding; IEA:InterPro.
GO:0007219; P:Notch signaling pathway; TAS:Reactome.::GO:0000079; P:regulation of cyclin-dependent protein kinase activity; IEA:InterPro.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; TAS:Reactome.
35Q18CD2    571   SYP1_CLOD6 Proline--tRNA ligase 1 OS=Clostrid...572.9     33.5     28     58GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004827; F:proline-tRNA ligase activity; IEA:EC.
GO:0006433; P:prolyl-tRNA aminoacylation; IEA:InterPro.
36P55168    283   CCNC_CHICK Cyclin-C OS=Gallus gallus (Chicken...1753.4     32.7     24     43GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; IEA:InterPro.
GO:0019901; F:protein kinase binding; IEA:InterPro.
GO:0000079; P:regulation of cyclin-dependent protein kinase activity; IEA:InterPro.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
37Q9TYP2    302   CCNC_CAEEL Cyclin-C OS=Caenorhabditis elegans...2613.4     32.7     20     39GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; IEA:InterPro.
GO:0019901; F:protein kinase binding; IEA:InterPro.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0000079; P:regulation of cyclin-dependent protein kinase activity; IEA:InterPro.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
38P39947    278   CCNC_RAT Cyclin-C OS=Rattus norvegicus (Rat)....1864.2     32.3     24     44GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; IEA:InterPro.
GO:0019901; F:protein kinase binding; IEA:InterPro.
GO:0007049; P:cell cycle; TAS:RGD.::GO:0000079; P:regulation of cyclin-dependent protein kinase activity; IEA:InterPro.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
39Q4KLA0    283   CCNC_XENLA Cyclin-C OS=Xenopus laevis (Africa...2134.8     32.3     22     41GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; IEA:InterPro.
GO:0019901; F:protein kinase binding; IEA:InterPro.
GO:0000079; P:regulation of cyclin-dependent protein kinase activity; IEA:InterPro.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
40Q28F72    283   CCNC_XENTR Cyclin-C OS=Xenopus tropicalis (We...2135.6     32.3     22     41GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; IEA:InterPro.
GO:0019901; F:protein kinase binding; IEA:InterPro.
GO:0000079; P:regulation of cyclin-dependent protein kinase activity; IEA:InterPro.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
41Q62447    283   CCNC_MOUSE Cyclin-C OS=Mus musculus (Mouse). ...1866.8     32     24     42GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; IEA:InterPro.::GO:0016592; C:mediator complex; IDA:MGI.
GO:0019901; F:protein kinase binding; IEA:InterPro.
GO:0000079; P:regulation of cyclin-dependent protein kinase activity; IEA:InterPro.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
42Q3ZCK5    283   CCNC_BOVIN Cyclin-C OS=Bos taurus (Bovine). G...1757.2     32     24     44GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; IEA:InterPro.
GO:0019901; F:protein kinase binding; IEA:InterPro.
GO:0000079; P:regulation of cyclin-dependent protein kinase activity; IEA:InterPro.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
43P30182    1473   TOP2_ARATH DNA topoisomerase 2 OS=Arabidopsis...917.5     32.3     33     44GO:0005694; C:chromosome; IEA:InterPro.::GO:0005634; C:nucleus; IDA:TAIR.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003918; F:DNA topoisomerase (ATP-hydrolyzing) activity; IEA:EC.
GO:0006265; P:DNA topological change; IEA:InterPro.
44Q8LBC0    317   CCT13_ARATH Cyclin-T1-3 OS=Arabidopsis thalia...2288     31.6     22     42GO:0005634; C:nucleus; IDA:TAIR.
GO:0019901; F:protein kinase binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0000079; P:regulation of cyclin-dependent protein kinase activity; IEA:InterPro.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.
records
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