Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YIR009W
Length:
111
Number of sequences:
5887
Description:
YIR009W MSL1 SGDID:S000001448, Chr IX from 374525-374860, Genome Release 64-1-1, Verified ORF, "U2B component of U2 snRNP, involved in splicing, binds the U2 snRNA stem-loop IV in vitro but requires association of Lea1p for in vivo binding; does not contain the conserved C-terminal RNA binding domain found in other family members"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
181Q4G055    515   RBM40_RAT RNA-binding protein 40 OS=Rattus no...1110.34     33.1     27     48GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
182Q3UZ01    514   RBM40_MOUSE RNA-binding protein 40 OS=Mus mus...1110.34     33.1     27     48GO:0005689; C:U12-type spliceosomal complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
183Q44560    102   RBPA_NOSS1 Putative RNA-binding protein rbpA ...810.39     32     26     51
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
184Q09442    388   SF3B4_CAEEL Splicing factor 3B subunit 4 OS=C...1000.43     32.7     30     45GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0040022; P:feminization of hermaphroditic germ-line; IMP:WormBase.::GO:0007281; P:germ cell development; IMP:WormBase.::GO:0040035; P:hermaphrodite genitalia development; IMP:WormBase.::GO:0040011; P:locomotion; IMP:WormBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0042127; P:regulation of cell proliferation; IMP:WormBase.::GO:0040020; P:regulation of meiosis; IMP:WormBase.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
185Q60990    380   RBY1B_MOUSE RNA-binding motif protein, Y chro...860.56     32.3     30     48GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
186Q6DEY7    629   EPAB_XENTR Embryonic polyadenylate-binding pr...759.2     28.9     25     48GO:0005737; C:cytoplasm; ISS:UniProtKB.
GO:0031370; F:eukaryotic initiation factor 4G binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.::GO:0043621; F:protein self-association; ISS:UniProtKB.
GO:0043009; P:chordate embryonic development; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048255; P:mRNA stabilization; ISS:UniProtKB.::GO:0060212; P:negative regulation of nuclear-transcribed mRNA poly(A) tail shortening; ISS:UniProtKB.::GO:0006412; P:translation; IEA:UniProtKB-KW.
187O74400    674   YOCE_SCHPO Uncharacterized RNA-binding protei...580.59     32.3     33     55GO:0005730; C:nucleolus; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; ISS:PomBase.
188A6NFN3    312   RFOX3_HUMAN RNA binding protein fox-1 homolog...840.6     32.3     30     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
189Q6GR16    629   EPABB_XENLA Embryonic polyadenylate-binding p...715.4     29.6     25     48GO:0005737; C:cytoplasm; ISS:UniProtKB.
GO:0031370; F:eukaryotic initiation factor 4G binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.::GO:0043621; F:protein self-association; ISS:UniProtKB.
GO:0043009; P:chordate embryonic development; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048255; P:mRNA stabilization; ISS:UniProtKB.::GO:0060212; P:negative regulation of nuclear-transcribed mRNA poly(A) tail shortening; ISS:UniProtKB.::GO:0006412; P:translation; IEA:UniProtKB-KW.
190P0CB38    370   PAB4L_HUMAN Polyadenylate-binding protein 4-l...780.64     32.3     26     50
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
191Q86U06    439   RBM23_HUMAN Probable RNA-binding protein 23 O...940.72     32     28     46GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:InterPro.
192P0CP46    673   PABP_CRYNJ Polyadenylate-binding protein, cyt...860.76     32     29     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
193P0CP47    673   PABP_CRYNB Polyadenylate-binding protein, cyt...860.76     32     29     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
194Q4R813    394   RMXL2_MACFA RNA-binding motif protein, X-link...760.79     32     28     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
195Q9VWD4    580   Y4230_DROME Probable RNA-binding protein CG14...630.81     32     32     52
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
196O75526    392   RMXL2_HUMAN RNA-binding motif protein, X-link...760.88     32     28     47GO:0005634; C:nucleus; IDA:HPA.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
197P17225    527   PTBP1_MOUSE Polypyrimidine tract-binding prot...604.6     30     32     53GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051148; P:negative regulation of muscle cell differentiation; ISS:UniProtKB.::GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
198Q43349    342   ROC2_ARATH 29 kDa ribonucleoprotein, chloropl...551.1     31.6     36     49GO:0009570; C:chloroplast stroma; IDA:TAIR.::GO:0009534; C:chloroplast thylakoid; IDA:TAIR.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008266; F:poly(U) RNA binding; IDA:TAIR.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
199Q925G0    155   RBM3_RAT Putative RNA-binding protein 3 OS=Ra...811.2     31.2     28     48GO:0005737; C:cytoplasm; IDA:UniProtKB.::GO:0030425; C:dendrite; IDA:UniProtKB.::GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0045727; P:positive regulation of translation; IDA:UniProtKB.
200Q24491    197   RX21_DROME RNA-binding protein Rsf1 OS=Drosop...761.2     31.2     32     43GO:0005634; C:nucleus; IDA:FlyBase.
GO:0003729; F:mRNA binding; TAS:FlyBase.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; TAS:FlyBase.
201Q9FGL9    429   PTBP2_ARATH Polypyrimidine tract-binding prot...451.2     31.6     42     60GO:0000932; C:cytoplasmic mRNA processing body; IDA:TAIR.::GO:0005634; C:nucleus; IDA:TAIR.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0009846; P:pollen germination; IGI:TAIR.::GO:0043484; P:regulation of RNA splicing; IDA:TAIR.::GO:0006417; P:regulation of translation; IEP:TAIR.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
202Q9UT83    609   MUG28_SCHPO Meiotically up-regulated gene 28 ...671.3     31.6     36     43GO:0005619; C:ascospore wall; IDA:PomBase.::GO:0005737; C:cytoplasm; IDA:PomBase.::GO:0005628; C:prospore membrane; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0031321; P:ascospore-type prospore assembly; IMP:PomBase.::GO:0007126; P:meiosis; IEA:UniProtKB-KW.
203Q10B98    312   C3H25_ORYSJ Zinc finger CCCH domain-containin...611.4     31.2     30     52
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
204P19684    324   ROC5_NICSY 33 kDa ribonucleoprotein, chloropl...781.5     31.2     29     49GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
205Q9ZR40    573   U2A2B_NICPL Splicing factor U2af large subuni...441.5     31.2     41     70GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
206Q28IQ9    166   CIRBP_XENTR Cold-inducible RNA-binding protei...681.5     30.8     25     53GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0019899; F:enzyme binding; ISS:UniProtKB.::GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0016477; P:cell migration; ISS:UniProtKB.::GO:0007369; P:gastrulation; ISS:UniProtKB.::GO:0048255; P:mRNA stabilization; ISS:UniProtKB.::GO:0060212; P:negative regulation of nuclear-transcribed mRNA poly(A) tail shortening; ISS:UniProtKB.::GO:0022008; P:neurogenesis; ISS:UniProtKB.::GO:0045727; P:positive regulation of translation; ISS:UniProtKB.::GO:0048793; P:pronephros development; ISS:UniProtKB.::GO:0009409; P:response to cold; ISS:UniProtKB.
207Q9P3U1    464   YKX5_SCHPO Uncharacterized RNA-binding protei...651.6     31.2     25     51GO:0005829; C:cytosol; IDA:PomBase.::GO:0030530; C:heterogeneous nuclear ribonucleoprotein complex; ISS:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:PomBase.
GO:0016973; P:poly(A)+ mRNA export from nucleus; ISS:PomBase.
208Q4VXU2    614   PAP1L_HUMAN Polyadenylate-binding protein 1-l...781.6     31.2     27     47
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
209Q6CWX1    269   EIF3G_KLULA Eukaryotic translation initiation...851.7     30.8     29     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
210Q7ZT82    382   RFX1L_DANRE RNA binding protein fox-1 homolog...661.7     31.2     27     53GO:0005634; C:nucleus; IDA:ZFIN.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IDA:ZFIN.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0043484; P:regulation of RNA splicing; IDA:ZFIN.::GO:0008380; P:RNA splicing; IDA:ZFIN.
211A5DNX9    274   EIF3G_PICGU Eukaryotic translation initiation...781.8     30.8     32     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
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