rec. | Subject | Hit Length | Description | Align.Len | E value | Bit score | % ident. | % pos. | GO associations |
1 | P40567 | 111 | MSL1_YEAST U2 small nuclear ribonucleoprotein... | 111 | 2e-76 | 228 | 100 | 100 | GO:0005686; C:U2 snRNP; TAS:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0030620; F:U2 snRNA binding; IPI:SGD. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IMP:SGD. | 2 | Q7LL14 | 111 | RU2B_SCHPO Probable U2 small nuclear ribonucl... | 86 | 0.00000000000004 | 67.8 | 40 | 65 | GO:0005829; C:cytosol; IDA:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0005686; C:U2 snRNP; ISS:PomBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0030620; F:U2 snRNA binding; ISS:PomBase. | | | | | | | | | | GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase. | 3 | Q62189 | 287 | SNRPA_MOUSE U1 small nuclear ribonucleoprotei... | 95 | 0.00000000000006 | 69.3 | 33 | 65 | GO:0005681; C:spliceosomal complex; ISS:HGNC. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro. | 4 | Q2KIR1 | 282 | SNRPA_BOVIN U1 small nuclear ribonucleoprotei... | 94 | 0.0000000000004 | 67 | 32 | 65 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro. | 5 | P09012 | 282 | SNRPA_HUMAN U1 small nuclear ribonucleoprotei... | 94 | 0.0000000000004 | 67 | 32 | 65 | GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005681; C:spliceosomal complex; IDA:HGNC. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:HGNC. | 6 | Q06AA4 | 282 | SNRPA_PIG U1 small nuclear ribonucleoprotein ... | 94 | 0.0000000000004 | 67 | 32 | 65 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro. | 7 | P45429 | 282 | SNRPA_XENLA U1 small nuclear ribonucleoprotei... | 86 | 0.000000000001 | 65.5 | 37 | 65 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro. | 8 | Q9CQI7 | 225 | RU2B_MOUSE U2 small nuclear ribonucleoprotein... | 85 | 0.000000000006 | 63.2 | 32 | 67 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:MGI.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro. | 9 | P08579 | 225 | RU2B_HUMAN U2 small nuclear ribonucleoprotein... | 85 | 0.000000000007 | 62.8 | 32 | 67 | GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005686; C:U2 snRNP; TAS:ProtInc. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:HGNC.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB. | 10 | Q54J05 | 241 | RU2B_DICDI U2 small nuclear ribonucleoprotein... | 84 | 0.000000000009 | 62.8 | 40 | 62 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro. | 11 | O22922 | 232 | RU2B1_ARATH U2 small nuclear ribonucleoprotei... | 84 | 0.0000000006 | 57.8 | 31 | 62 | GO:0015030; C:Cajal body; IDA:UniProtKB.::GO:0005737; C:cytoplasm; IDA:TAIR.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005686; C:U2 snRNP; IDA:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000354; P:cis assembly of pre-catalytic spliceosome; TAS:TAIR. | 12 | O74968 | 249 | RU1A_SCHPO U1 small nuclear ribonucleoprotein... | 98 | 9.6 | 28.9 | 23 | 46 | GO:0005730; C:nucleolus; IDA:PomBase.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005685; C:U1 snRNP; IDA:PomBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000395; P:nuclear mRNA 5'-splice site recognition; IC:PomBase. | 13 | Q8H1S6 | 229 | RU2B2_ARATH U2 small nuclear ribonucleoprotei... | 81 | 0.000000002 | 56.2 | 32 | 63 | GO:0015030; C:Cajal body; IDA:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005686; C:U2 snRNP; IDA:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro. | 14 | P43332 | 216 | SNRPA_DROME U1 small nuclear ribonucleoprotei... | 81 | 0.000000002 | 55.8 | 38 | 68 | GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.::GO:0043234; C:protein complex; IPI:FlyBase.::GO:0005685; C:U1 snRNP; ISS:FlyBase.::GO:0005686; C:U2 snRNP; ISS:FlyBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:FlyBase.::GO:0035614; F:snRNA stem-loop binding; IDA:FlyBase.::GO:0030619; F:U1 snRNA binding; IDA:FlyBase.::GO:0030620; F:U2 snRNA binding; IDA:FlyBase. | | | | | | | | | | GO:0019099; P:female germ-line sex determination; NAS:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:FlyBase.::GO:0048477; P:oogenesis; IMP:FlyBase.::GO:0007539; P:primary sex determination, soma; NAS:FlyBase.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IMP:FlyBase. | 15 | Q0DKM4 | 253 | RU1A_ORYSJ U1 small nuclear ribonucleoprotein... | 85 | 0.000000005 | 55.5 | 32 | 65 | GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005685; C:U1 snRNP; ISS:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro. | 16 | A2Y0J7 | 253 | RU1A_ORYSI U1 small nuclear ribonucleoprotein... | 85 | 0.000000005 | 55.5 | 32 | 65 | GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005685; C:U1 snRNP; ISS:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro. | 17 | Q39244 | 250 | RU1A_ARATH U1 small nuclear ribonucleoprotein... | 85 | 0.00000001 | 54.3 | 29 | 65 | GO:0005829; C:cytosol; IDA:TAIR.::GO:0005730; C:nucleolus; IDA:TAIR.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005685; C:U1 snRNP; IDA:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.::GO:0009651; P:response to salt stress; IGI:TAIR. | 18 | B8AM21 | 232 | RU2B_ORYSI U2 small nuclear ribonucleoprotein... | 84 | 0.0000001 | 51.6 | 32 | 61 | GO:0015030; C:Cajal body; ISS:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005686; C:U2 snRNP; ISS:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro. | 19 | Q10MR0 | 232 | RU2B_ORYSJ U2 small nuclear ribonucleoprotein... | 84 | 0.0000001 | 51.2 | 32 | 60 | GO:0015030; C:Cajal body; ISS:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005686; C:U2 snRNP; ISS:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro. | 20 | P26599 | 531 | PTBP1_HUMAN Polypyrimidine tract-binding prot... | 60 | 4.3 | 30 | 32 | 53 | GO:0030530; C:heterogeneous nuclear ribonucleoprotein complex; TAS:ProtInc.::GO:0005730; C:nucleolus; TAS:ProtInc.::GO:0005654; C:nucleoplasm; TAS:Reactome. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008187; F:poly-pyrimidine tract binding; TAS:ProtInc.::GO:0036002; F:pre-mRNA binding; IDA:UniProtKB.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:InterPro. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:InterPro.::GO:0051148; P:negative regulation of muscle cell differentiation; IDA:UniProtKB.::GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; IDA:UniProtKB.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IDA:UniProtKB. | 21 | Q8WN55 | 531 | PTBP1_BOVIN Polypyrimidine tract-binding prot... | 60 | 4.3 | 30 | 32 | 53 | GO:0005634; C:nucleus; ISS:AgBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051148; P:negative regulation of muscle cell differentiation; ISS:UniProtKB.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 22 | Q9UKA9 | 531 | PTBP2_HUMAN Polypyrimidine tract-binding prot... | 60 | 7.7 | 29.3 | 30 | 53 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | GO:0033119; P:negative regulation of RNA splicing; IDA:UniProtKB. | 23 | Q66H20 | 531 | PTBP2_RAT Polypyrimidine tract-binding protei... | 60 | 8 | 29.3 | 30 | 53 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | | 24 | Q91Z31 | 531 | PTBP2_MOUSE Polypyrimidine tract-binding prot... | 60 | 8 | 29.3 | 30 | 53 | GO:0005681; C:spliceosomal complex; IDA:MGI. | | | | | | | | | | GO:0003729; F:mRNA binding; IDA:MGI.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct. | | | | | | | | | | GO:0006376; P:mRNA splice site selection; IDA:MGI. | 25 | Q00438 | 555 | PTBP1_RAT Polypyrimidine tract-binding protei... | 60 | 4.7 | 30 | 32 | 53 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0004519; F:endonuclease activity; TAS:RGD.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; TAS:RGD.::GO:0003697; F:single-stranded DNA binding; TAS:RGD. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051148; P:negative regulation of muscle cell differentiation; ISS:UniProtKB.::GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0008380; P:RNA splicing; TAS:RGD. | 26 | Q29099 | 557 | PTBP1_PIG Polypyrimidine tract-binding protei... | 60 | 4.8 | 29.6 | 32 | 53 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051148; P:negative regulation of muscle cell differentiation; ISS:UniProtKB.::GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 27 | O95758 | 552 | PTBP3_HUMAN Polypyrimidine tract-binding prot... | 60 | 9.5 | 28.9 | 30 | 53 | GO:0005634; C:nucleus; IEA:InterPro. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; TAS:ProtInc. | | | | | | | | | | GO:0009653; P:anatomical structure morphogenesis; TAS:ProtInc.::GO:0043249; P:erythrocyte maturation; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0033119; P:negative regulation of RNA splicing; IDA:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 28 | Q8BHD7 | 523 | PTBP3_MOUSE Polypyrimidine tract-binding prot... | 57 | 8.9 | 28.9 | 30 | 54 | GO:0005634; C:nucleus; IEA:InterPro. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0043249; P:erythrocyte maturation; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 29 | Q9Z118 | 523 | PTBP3_RAT Polypyrimidine tract-binding protei... | 60 | 8.4 | 29.3 | 30 | 53 | GO:0005634; C:nucleus; IEA:InterPro. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; NAS:RGD. | | | | | | | | | | GO:0043249; P:erythrocyte maturation; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0045595; P:regulation of cell differentiation; IMP:RGD.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 30 | Q8CH84 | 359 | ELAV2_RAT ELAV-like protein 2 OS=Rattus norve... | 65 | 0.00009 | 43.5 | 37 | 55 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 31 | Q5R9Z6 | 359 | ELAV2_PONAB ELAV-like protein 2 OS=Pongo abel... | 65 | 0.00009 | 43.5 | 37 | 55 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | |