Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YIR005W
Length:
148
Number of sequences:
5887
Description:
YIR005W IST3 SGDID:S000001444, Chr IX from 364889-365335, Genome Release 64-1-1, Verified ORF, "Component of the U2 snRNP, required for the first catalytic step of splicing and for spliceosomal assembly; interacts with Rds3p and is required for Mer1p-activated splicing"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
721Q9JJW6    218   REFP2_MOUSE RNA and export factor-binding pro...750.66     33.1     25     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IDA:MGI.::GO:0003697; F:single-stranded DNA binding; IDA:MGI.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
722Q99KG3    930   RBM10_MOUSE RNA-binding protein 10 OS=Mus mus...770.66     33.5     29     56GO:0016585; C:chromatin remodeling complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
723P98175    930   RBM10_HUMAN RNA-binding protein 10 OS=Homo sa...770.67     33.5     29     56GO:0016585; C:chromatin remodeling complex; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; NAS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
724Q5ZJX4    215   RBM38_CHICK RNA-binding protein 38 OS=Gallus ...1140.69     33.1     22     45GO:0005829; C:cytosol; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
725Q24491    197   RX21_DROME RNA-binding protein Rsf1 OS=Drosop...730.71     32.7     27     56GO:0005634; C:nucleus; IDA:FlyBase.
GO:0003729; F:mRNA binding; TAS:FlyBase.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; TAS:FlyBase.
726Q2KI24    380   MTHSD_BOVIN Methenyltetrahydrofolate synthase...720.72     33.1     29     44
GO:0030272; F:5-formyltetrahydrofolate cyclo-ligase activity; IEA:InterPro.::GO:0005524; F:ATP binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0009396; P:folic acid-containing compound biosynthetic process; IEA:InterPro.
727O60176    473   YG41_SCHPO Uncharacterized RNA-binding protei...730.72     33.1     23     52GO:0000932; C:cytoplasmic mRNA processing body; ISS:PomBase.::GO:0005829; C:cytosol; IDA:PomBase.::GO:0071004; C:U2-type prespliceosome; ISS:PomBase.
GO:0003729; F:mRNA binding; ISS:PomBase.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0070935; P:3'-UTR-mediated mRNA stabilization; ISS:PomBase.
728Q6IQ97    419   RBM41_DANRE RNA-binding protein 4.1 OS=Danio ...860.74     33.1     23     51GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
729Q9FYB7    284   RSZ32_ARATH Serine/arginine-rich splicing fac...850.77     33.1     26     46
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:TAIR.
730Q5R6W3    190   RBM18_PONAB Probable RNA-binding protein 18 O...650.82     32.7     25     55
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
731Q9CR83    190   RBM18_MOUSE Probable RNA-binding protein 18 O...650.82     32.7     25     55
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
732Q96H35    190   RBM18_HUMAN Probable RNA-binding protein 18 O...650.82     32.7     25     55
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
733Q5ZLP8    584   IF2B3_CHICK Insulin-like growth factor 2 mRNA...860.84     33.1     22     55GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
734B4PIS2    582   SHEP_DROYA Protein alan shepard OS=Drosophila...622.4     31.6     24     50
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0009629; P:response to gravity; ISS:UniProtKB.
735Q62176    237   RBM38_MOUSE RNA-binding protein 38 OS=Mus mus...1160.88     32.7     22     46GO:0005829; C:cytosol; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0010830; P:regulation of myotube differentiation; IDA:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
736Q8MSV2    578   SHEP_DROME Protein alan shepard OS=Drosophila...622.4     31.6     24     50
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0009629; P:response to gravity; IMP:UniProtKB.
737Q1MTR2    243   RNPS1_SCHPO RNA-binding protein with serine-r...730.89     32.7     25     49GO:0005829; C:cytosol; IDA:PomBase.::GO:0005681; C:spliceosomal complex; ISS:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; ISS:PomBase.
738B4MM23    581   SHEP_DROWI Protein alan shepard OS=Drosophila...980.93     33.1     24     43
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0009629; P:response to gravity; ISS:UniProtKB.
739B4HUE4    579   SHEP_DROSE Protein alan shepard OS=Drosophila...622.6     31.6     24     50
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0009629; P:response to gravity; ISS:UniProtKB.
740B3NGA1    582   SHEP_DROER Protein alan shepard OS=Drosophila...622.6     31.6     24     50
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0009629; P:response to gravity; ISS:UniProtKB.
741B4QRJ0    576   SHEP_DROSI Protein alan shepard OS=Drosophila...790.96     32.7     27     43
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0009629; P:response to gravity; ISS:UniProtKB.
742B4KX02    592   SHEP_DROMO Protein alan shepard OS=Drosophila...807.5     30.4     21     46
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0009629; P:response to gravity; ISS:UniProtKB.
743B8AM21    232   RU2B_ORYSI U2 small nuclear ribonucleoprotein...680.97     32.7     29     51GO:0015030; C:Cajal body; ISS:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005686; C:U2 snRNP; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.
744Q503H1    314   TSAP1_DANRE tRNA selenocysteine 1-associated ...680.98     32.7     26     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006412; P:translation; IEA:UniProtKB-KW.
745Q08BH5    510   RBM46_DANRE Probable RNA-binding protein 46 O...650.99     32.7     25     58
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
746P0CN44    753   EIF3B_CRYNJ Eukaryotic translation initiation...811     32.7     26     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
747P0CN45    753   EIF3B_CRYNB Eukaryotic translation initiation...811     32.7     26     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
748Q10MR0    232   RU2B_ORYSJ U2 small nuclear ribonucleoprotein...681     32.3     29     51GO:0015030; C:Cajal body; ISS:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005686; C:U2 snRNP; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.
749Q39244    250   RU1A_ARATH U1 small nuclear ribonucleoprotein...921.1     32.3     23     51GO:0005829; C:cytosol; IDA:TAIR.::GO:0005730; C:nucleolus; IDA:TAIR.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005685; C:U1 snRNP; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.::GO:0009651; P:response to salt stress; IGI:TAIR.
750Q10572    415   FOX1_CAEEL Sex determination protein fox-1 OS...971.2     32.3     23     46GO:0005634; C:nucleus; IDA:WormBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003727; F:single-stranded RNA binding; IDA:WormBase.
GO:0042464; P:dosage compensation by hypoactivation of X chromosome; IGI:WormBase.::GO:0007617; P:mating behavior; IMP:WormBase.::GO:0016071; P:mRNA metabolic process; IMP:WormBase.::GO:0018991; P:oviposition; IMP:WormBase.
751Q4G0J3    582   LARP7_HUMAN La-related protein 7 OS=Homo sapi...651.2     32.7     26     54GO:0005737; C:cytoplasm; IDA:HPA.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:InterPro.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006396; P:RNA processing; IEA:InterPro.
records
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