Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YIR005W
Length:
148
Number of sequences:
5887
Description:
YIR005W IST3 SGDID:S000001444, Chr IX from 364889-365335, Genome Release 64-1-1, Verified ORF, "Component of the U2 snRNP, required for the first catalytic step of splicing and for spliceosomal assembly; interacts with Rds3p and is required for Mer1p-activated splicing"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
481P92965    350   RSP40_ARATH Arginine/serine-rich-splicing fac...770.007     38.9     30     51GO:0016607; C:nuclear speck; IDA:TAIR.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0008380; P:RNA splicing; NAS:TAIR.
482Q5R7H2    248   SRSF1_PONAB Serine/arginine-rich splicing fac...760.007     38.9     32     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; ISS:UniProtKB.
483Q3YLA6    248   SRSF1_PIG Serine/arginine-rich splicing facto...760.007     38.9     32     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; ISS:UniProtKB.
484Q6PDM2    248   SRSF1_MOUSE Serine/arginine-rich splicing fac...760.007     38.9     32     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.::GO:0050733; F:RS domain binding; IPI:MGI.
GO:0001701; P:in utero embryonic development; IMP:MGI.::GO:0000395; P:nuclear mRNA 5'-splice site recognition; ISS:UniProtKB.
485Q07955    248   SRSF1_HUMAN Serine/arginine-rich splicing fac...760.007     38.9     32     53GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IDA:UniProtKB.
GO:0031124; P:mRNA 3'-end processing; TAS:Reactome.::GO:0006406; P:mRNA export from nucleus; TAS:Reactome.::GO:0000395; P:nuclear mRNA 5'-splice site recognition; IDA:UniProtKB.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
486Q0VCY7    248   SRSF1_BOVIN Serine/arginine-rich splicing fac...760.007     38.9     32     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; ISS:UniProtKB.
487Q1ZXC2    814   PAP1B_DICDI Polyadenylate-binding protein 1-B...822.6     31.6     23     51GO:0005737; C:cytoplasm; ISS:dictyBase.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:dictyBase.
GO:0006378; P:mRNA polyadenylation; ISS:dictyBase.
488P84104    164   SRSF3_MOUSE Serine/arginine-rich splicing fac...730.007     38.5     27     52GO:0016607; C:nuclear speck; IDA:BHF-UCL.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0043274; F:phospholipase binding; IPI:BHF-UCL.::GO:0003723; F:RNA binding; TAS:BHF-UCL.
GO:0008286; P:insulin receptor signaling pathway; TAS:BHF-UCL.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; TAS:BHF-UCL.
489P84103    164   SRSF3_HUMAN Serine/arginine-rich splicing fac...730.007     38.5     27     52GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; TAS:ProtInc.
GO:0031124; P:mRNA 3'-end processing; TAS:Reactome.::GO:0006406; P:mRNA export from nucleus; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
490Q3SZR8    164   SRSF3_BOVIN Serine/arginine-rich splicing fac...730.007     38.5     27     52GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
491Q6DII2    267   SRSF1_XENTR Serine/arginine-rich splicing fac...760.008     38.9     32     53GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
492Q9LYN7    907   AML4_ARATH Protein MEI2-like 4 OS=Arabidopsis...820.008     38.9     27     51
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0007126; P:meiosis; IEA:UniProtKB-KW.::GO:0048507; P:meristem development; IGI:TAIR.::GO:0045927; P:positive regulation of growth; IMP:UniProtKB.::GO:0045836; P:positive regulation of meiosis; IMP:UniProtKB.
493Q6K4N0    185   RSZ21_ORYSJ Serine/arginine-rich splicing fac...640.008     38.5     31     59
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
494Q1HE00    274   EIF3G_BOMMO Eukaryotic translation initiation...670.008     38.9     30     55GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
495Q8LPQ9    901   FPA_ARATH Flowering time control protein FPA ...870.008     38.9     28     49GO:0000785; C:chromatin; IDA:TAIR.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0031048; P:chromatin silencing by small RNA; IMP:TAIR.::GO:0009790; P:embryo development; IGI:TAIR.::GO:0009553; P:embryo sac development; IGI:TAIR.::GO:0009908; P:flower development; IEA:UniProtKB-KW.::GO:0006378; P:mRNA polyadenylation; IDA:UniProtKB.::GO:0009911; P:positive regulation of flower development; IMP:TAIR.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0010228; P:vegetative to reproductive phase transition of meristem; IMP:TAIR.
496Q6K9C3    200   RZP23_ORYSJ Serine/arginine-rich splicing fac...640.008     38.5     31     58
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IDA:UniProtKB.
497Q09167    269   SRSF5_RAT Serine/arginine-rich splicing facto...760.008     38.5     30     47GO:0016607; C:nuclear speck; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051726; P:regulation of cell cycle; IEP:RGD.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
498Q13243    272   SRSF5_HUMAN Serine/arginine-rich splicing fac...760.008     38.5     30     47GO:0005737; C:cytoplasm; IDA:HPA.::GO:0016607; C:nuclear speck; ISS:UniProtKB.::GO:0005730; C:nucleolus; IDA:HPA.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0031124; P:mRNA 3'-end processing; TAS:Reactome.::GO:0006406; P:mRNA export from nucleus; TAS:Reactome.::GO:0006376; P:mRNA splice site selection; TAS:ProtInc.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
499Q09100    369   RNP24_SCHPO RNA-binding protein rnp24 OS=Schi...1190.008     38.9     25     50GO:0005730; C:nucleolus; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:PomBase.
GO:0006364; P:rRNA processing; ISS:PomBase.
500O74978    276   YQL5_SCHPO Uncharacterized RNA-binding protei...800.009     38.5     23     51GO:0005730; C:nucleolus; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0042254; P:ribosome biogenesis; ISS:PomBase.
501P40561    250   SGN1_YEAST RNA-binding protein SGN1 OS=Saccha...760.009     38.5     28     53GO:0005737; C:cytoplasm; IDA:SGD.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:SGD.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0016071; P:mRNA metabolic process; IGI:SGD.
502O74400    674   YOCE_SCHPO Uncharacterized RNA-binding protei...820.084     35.8     26     54GO:0005730; C:nucleolus; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; ISS:PomBase.
503P08621    437   RU17_HUMAN U1 small nuclear ribonucleoprotein...1010.009     38.5     25     50GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005681; C:spliceosomal complex; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IMP:UniProtKB.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IDA:UniProtKB.::GO:0043484; P:regulation of RNA splicing; IMP:UniProtKB.
504Q06106    887   MRD1_YEAST Multiple RNA-binding domain-contai...751.8     32     27     52GO:0030686; C:90S preribosome; IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000480; P:endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000447; P:endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000472; P:endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0034462; P:small-subunit processome assembly; IMP:SGD.
505O35326    270   SRSF5_MOUSE Serine/arginine-rich splicing fac...760.01     38.5     30     47GO:0016607; C:nuclear speck; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
506B4KCD5    154   NCBP2_DROMO Nuclear cap-binding protein subun...780.01     37.7     26     54GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0031047; P:gene silencing by RNA; IEA:UniProtKB-KW.::GO:0006370; P:mRNA capping; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
507P51989    346   RO21_XENLA Heterogeneous nuclear ribonucleopr...503.1     31.2     24     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
508Q4KMD3    208   U1SBP_DANRE U11/U12 small nuclear ribonucleop...870.01     38.1     30     54GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
509Q8CFD1    476   RBM45_RAT RNA-binding protein 45 OS=Rattus no...865.3     30.8     27     47GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0007399; P:nervous system development; IEP:UniProtKB.
510O13620    833   MRD1_SCHPO Multiple RNA-binding domain-contai...720.027     37.4     26     47GO:0030686; C:90S preribosome; ISS:PomBase.::GO:0005730; C:nucleolus; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:PomBase.
GO:0006364; P:rRNA processing; ISS:PomBase.::GO:0034462; P:small-subunit processome assembly; ISS:PomBase.
511Q6PG31    283   RNPS1_DANRE RNA-binding protein with serine-r...760.011     38.5     28     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
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