Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YIL061C
Length:
300
Number of sequences:
5887
Description:
YIL061C SNP1 SGDID:S000001323, Chr IX from 245559-244657, Genome Release 64-1-1, reverse complement, Verified ORF, "Component of U1 snRNP required for mRNA splicing via spliceosome; substrate of the arginine methyltransferase Hmt1p; may interact with poly(A) polymerase to regulate polyadenylation; homolog of human U1 70K protein"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
361Q4X1I3    290   EIF3G_ASPFU Eukaryotic translation initiation...650.002     43.1     29     58GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
362B0XS28    290   EIF3G_ASPFC Eukaryotic translation initiation...650.002     43.1     29     58GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
363Q5RJM0    271   MK67I_RAT MKI67 FHA domain-interacting nucleo...570.002     43.1     32     58GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0010923; P:negative regulation of phosphatase activity; ISS:UniProtKB.
364A2VDB3    392   RBM42_XENLA RNA-binding protein 42 OS=Xenopus...730.002     43.1     33     55GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
365Q6AYL5    424   SF3B4_RAT Splicing factor 3B subunit 4 OS=Rat...480.33     36.2     29     58
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
366Q8QZY9    424   SF3B4_MOUSE Splicing factor 3B subunit 4 OS=M...480.33     36.2     29     58GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
367P57052    281   RBM11_HUMAN Putative RNA-binding protein 11 O...730.002     42.7     34     53
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
368Q4IE79    605   PPIL4_GIBZE Peptidyl-prolyl cis-trans isomera...840.002     43.5     32     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003755; F:peptidyl-prolyl cis-trans isomerase activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006457; P:protein folding; IEA:UniProtKB-KW.
369A1DGS2    290   EIF3G_NEOFI Eukaryotic translation initiation...650.002     43.1     29     58GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
370Q10355    219   YDB2_SCHPO Uncharacterized RNA-binding protei...930.002     42.7     27     55GO:0005634; C:nucleus; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0007126; P:meiosis; IEP:PomBase.
371Q754W7    218   NCBP2_ASHGO Nuclear cap-binding protein subun...1030.002     42.7     28     50GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006370; P:mRNA capping; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
372Q5U259    326   ELV1B_XENLA ELAV-like protein 1-B OS=Xenopus ...730.25     36.2     30     49GO:0005938; C:cell cortex; IDA:UniProtKB.::GO:0005634; C:nucleus; IDA:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IPI:UniProtKB.
GO:0003730; F:mRNA 3'-UTR binding; IDA:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008266; F:poly(U) RNA binding; ISS:UniProtKB.
GO:0007369; P:gastrulation; ISS:UniProtKB.::GO:0008298; P:intracellular mRNA localization; IMP:UniProtKB.::GO:0048255; P:mRNA stabilization; ISS:UniProtKB.
373Q6GR16    629   EPABB_XENLA Embryonic polyadenylate-binding p...900.69     35.4     29     46GO:0005737; C:cytoplasm; ISS:UniProtKB.
GO:0031370; F:eukaryotic initiation factor 4G binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.::GO:0043621; F:protein self-association; ISS:UniProtKB.
GO:0043009; P:chordate embryonic development; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048255; P:mRNA stabilization; ISS:UniProtKB.::GO:0060212; P:negative regulation of nuclear-transcribed mRNA poly(A) tail shortening; ISS:UniProtKB.::GO:0006412; P:translation; IEA:UniProtKB-KW.
374P42731    629   PABP2_ARATH Polyadenylate-binding protein 2 O...750.33     36.2     29     48GO:0005829; C:cytosol; IDA:TAIR.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0009651; P:response to salt stress; IEP:TAIR.
375Q66KL9    392   RBM42_XENTR RNA-binding protein 42 OS=Xenopus...830.002     43.1     30     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
376Q28ZX3    225   PABP2_DROPS Polyadenylate-binding protein 2 O...730.002     42.4     32     56GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0042802; F:identical protein binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.
GO:0006378; P:mRNA polyadenylation; ISS:UniProtKB.
377Q9QZI7    287   TSAP1_RAT tRNA selenocysteine 1-associated pr...621.1     34.3     24     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; ISS:HGNC.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0000049; F:tRNA binding; IDA:RGD.
GO:0001514; P:selenocysteine incorporation; ISS:HGNC.
378O22315    303   SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=A...510.002     42.7     37     63GO:0035061; C:interchromatin granule; IDA:TAIR.::GO:0016607; C:nuclear speck; IDA:TAIR.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
379Q503H1    314   TSAP1_DANRE tRNA selenocysteine 1-associated ...620.002     42.7     31     61GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006412; P:translation; IEA:UniProtKB-KW.
380Q804A5    218   EPA2A_XENLA Embryonic polyadenylate-binding p...730.002     42.4     32     55GO:0005737; C:cytoplasm; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:UniProtKB.
381A7SKE9    294   EIF3G_NEMVE Eukaryotic translation initiation...520.002     42.7     42     58GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
382Q9XFD1    257   NCBP2_ARATH Nuclear cap-binding protein subun...1340.002     42.4     28     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005845; C:mRNA cap binding complex; TAS:TAIR.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0000339; F:RNA cap binding; IDA:TAIR.
GO:0006370; P:mRNA capping; IEA:UniProtKB-KW.::GO:0031053; P:primary miRNA processing; IMP:TAIR.::GO:0000394; P:RNA splicing, via endonucleolytic cleavage and ligation; IMP:TAIR.
383Q9VRV7    121   PM14_DROME Pre-mRNA branch site p14-like prot...770.002     40.8     30     53GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0007052; P:mitotic spindle organization; IMP:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:FlyBase.
384Q6DEY7    629   EPAB_XENTR Embryonic polyadenylate-binding pr...782.7     33.5     22     51GO:0005737; C:cytoplasm; ISS:UniProtKB.
GO:0031370; F:eukaryotic initiation factor 4G binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.::GO:0043621; F:protein self-association; ISS:UniProtKB.
GO:0043009; P:chordate embryonic development; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048255; P:mRNA stabilization; ISS:UniProtKB.::GO:0060212; P:negative regulation of nuclear-transcribed mRNA poly(A) tail shortening; ISS:UniProtKB.::GO:0006412; P:translation; IEA:UniProtKB-KW.
385Q4VXU2    614   PAP1L_HUMAN Polyadenylate-binding protein 1-l...510.045     38.9     29     63
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
386O61374    348   SXL_CERCA Sex-lethal homolog OS=Ceratitis cap...560.014     40.4     39     59GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
387Q2GSX8    783   PABP_CHAGB Polyadenylate-binding protein, cyt...720.21     37     28     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
388O14369    388   SCE3_SCHPO Probable RNA-binding protein sce3 ...660.002     42.7     33     62GO:0005829; C:cytosol; IDA:PomBase.::GO:0005840; C:ribosome; ISS:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; ISS:PomBase.
GO:0002183; P:cytoplasmic translational initiation; NAS:PomBase.
389P19683    315   ROC4_NICSY 31 kDa ribonucleoprotein, chloropl...470.005     41.6     32     62GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
390Q9LEB3    428   RBP47_NICPL Polyadenylate-binding protein RBP...620.16     37     31     52GO:0010494; C:cytoplasmic stress granule; IDA:UniProtKB.::GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:UniProtKB.
GO:0034605; P:cellular response to heat; IDA:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
391Q9FPJ8    387   RB45A_ARATH Polyadenylate-binding protein RBP...650.004     42.4     32     52GO:0005829; C:cytosol; IDA:TAIR.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
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