Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YIL061C
Length:
300
Number of sequences:
5887
Description:
YIL061C SNP1 SGDID:S000001323, Chr IX from 245559-244657, Genome Release 64-1-1, reverse complement, Verified ORF, "Component of U1 snRNP required for mRNA splicing via spliceosome; substrate of the arginine methyltransferase Hmt1p; may interact with poly(A) polymerase to regulate polyadenylation; homolog of human U1 70K protein"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
151P51991    378   ROA3_HUMAN Heterogeneous nuclear ribonucleopr...550.033     39.3     27     64GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005730; C:nucleolus; IDA:HPA.::GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; TAS:ProtInc.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB.
152Q6URK4    379   ROA3_RAT Heterogeneous nuclear ribonucleoprot...550.033     39.3     27     64GO:0005737; C:cytoplasm; IDA:RGD.::GO:0030530; C:heterogeneous nuclear ribonucleoprotein complex; IDA:RGD.::GO:0043005; C:neuron projection; IDA:RGD.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003729; F:mRNA binding; IMP:RGD.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0051033; F:RNA transmembrane transporter activity; IMP:RGD.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IMP:RGD.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
153Q8BG05    379   ROA3_MOUSE Heterogeneous nuclear ribonucleopr...550.033     39.3     27     64
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
154A0JM51    486   CELF5_XENTR CUGBP Elav-like family member 5 O...1050.64     35.4     25     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
155Q8VH51    530   RBM39_MOUSE RNA-binding protein 39 OS=Mus mus...750.009     41.2     28     56GO:0005634; C:nucleus; TAS:MGI.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:MGI.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003713; F:transcription coactivator activity; TAS:MGI.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; TAS:MGI.
156O43040    363   CTF1_SCHPO Cleavage and termination factor 1 ...610.00001     50.1     31     59GO:0005829; C:cytosol; IDA:PomBase.::GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006378; P:mRNA polyadenylation; IC:PomBase.
157Q14498    530   RBM39_HUMAN RNA-binding protein 39 OS=Homo sa...750.009     41.2     28     56GO:0005813; C:centrosome; IDA:HPA.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IDA:HPA.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
158Q86U06    439   RBM23_HUMAN Probable RNA-binding protein 23 O...750.007     41.2     28     55GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:InterPro.
159Q02926    471   RB97D_DROME Ribonucleoprotein RB97D OS=Drosop...570.03     39.3     30     65
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0007286; P:spermatid development; IMP:FlyBase.
160P48810    385   RB87F_DROME Heterogeneous nuclear ribonucleop...650.004     42     32     57GO:0000785; C:chromatin; IDA:FlyBase.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0035062; C:omega speckle; IDA:FlyBase.::GO:0005703; C:polytene chromosome puff; IDA:FlyBase.::GO:0030529; C:ribonucleoprotein complex; IDA:FlyBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0043565; F:sequence-specific DNA binding; IDA:FlyBase.
GO:0007067; P:mitosis; IMP:FlyBase.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IMP:FlyBase.
161P51989    346   RO21_XENLA Heterogeneous nuclear ribonucleopr...660.003     42.4     24     61GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
162Q5ZI72    301   HNRDL_CHICK Heterogeneous nuclear ribonucleop...730.00002     48.5     34     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
163A5A6H4    320   ROA1_PANTR Heterogeneous nuclear ribonucleopr...550.059     38.1     25     62GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
164P49312    320   ROA1_MOUSE Heterogeneous nuclear ribonucleopr...550.059     38.1     25     62GO:0005737; C:cytoplasm; ISS:HGNC.::GO:0005654; C:nucleoplasm; ISS:HGNC.::GO:0005681; C:spliceosomal complex; ISS:HGNC.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003697; F:single-stranded DNA binding; ISS:HGNC.
GO:0000380; P:alternative nuclear mRNA splicing, via spliceosome; IDA:MGI.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0051168; P:nuclear export; ISS:HGNC.::GO:0051170; P:nuclear import; ISS:HGNC.
165P09867    320   ROA1_BOVIN Heterogeneous nuclear ribonucleopr...550.059     38.1     25     62GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.
166Q32P51    320   RA1L2_HUMAN Heterogeneous nuclear ribonucleop...550.054     38.5     25     62GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
167B0BNE4    269   EPAB2_RAT Embryonic polyadenylate-binding pro...610.00002     48.9     34     57GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
168P04256    320   ROA1_RAT Heterogeneous nuclear ribonucleoprot...550.059     38.1     25     62GO:0005737; C:cytoplasm; ISS:HGNC.::GO:0005654; C:nucleoplasm; ISS:HGNC.::GO:0005681; C:spliceosomal complex; ISS:HGNC.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; TAS:RGD.::GO:0003697; F:single-stranded DNA binding; ISS:HGNC.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0051168; P:nuclear export; ISS:HGNC.::GO:0051170; P:nuclear import; ISS:HGNC.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
169P48809    421   RB27C_DROME Heterogeneous nuclear ribonucleop...590.00007     47.4     29     66GO:0005737; C:cytoplasm; IDA:FlyBase.::GO:0005654; C:nucleoplasm; IDA:FlyBase.::GO:0043234; C:protein complex; IPI:FlyBase.::GO:0030529; C:ribonucleoprotein complex; IDA:FlyBase.
GO:0003730; F:mRNA 3'-UTR binding; IDA:FlyBase.::GO:0048027; F:mRNA 5'-UTR binding; NAS:FlyBase.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:FlyBase.::GO:0003697; F:single-stranded DNA binding; IDA:FlyBase.
GO:0007411; P:axon guidance; IMP:FlyBase.::GO:0007298; P:border follicle cell migration; IMP:FlyBase.::GO:0007319; P:negative regulation of oskar mRNA translation; TAS:FlyBase.::GO:0045451; P:pole plasm oskar mRNA localization; IMP:FlyBase.::GO:0045727; P:positive regulation of translation; IDA:FlyBase.::GO:0048024; P:regulation of nuclear mRNA splicing, via spliceosome; IMP:FlyBase.
170Q8HXM1    572   CSTF2_BOVIN Cleavage stimulation factor subun...630.00002     49.7     32     59GO:0071920; C:cleavage body; ISS:UniProtKB.::GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
171Q6FUS6    396   NOP12_CANGA Nucleolar protein 12 OS=NRRL Y-65...680.00002     49.3     38     56GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
172Q28521    320   ROA1_MACMU Heterogeneous nuclear ribonucleopr...550.062     38.1     25     62GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
173P33240    577   CSTF2_HUMAN Cleavage stimulation factor subun...610.00002     49.7     34     59GO:0071920; C:cleavage body; IDA:UniProtKB.::GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; TAS:ProtInc.
GO:0006379; P:mRNA cleavage; TAS:ProtInc.::GO:0006378; P:mRNA polyadenylation; TAS:ProtInc.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
174P25299    296   RNA15_YEAST mRNA 3'-end-processing protein RN...840.00002     48.9     31     55GO:0005849; C:mRNA cleavage factor complex; IPI:SGD.
GO:0003729; F:mRNA binding; IDA:SGD.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0046982; F:protein heterodimerization activity; IPI:SGD.
GO:0006379; P:mRNA cleavage; IDA:SGD.::GO:0006378; P:mRNA polyadenylation; IDA:SGD.
175Q8BIQ5    580   CSTF2_MOUSE Cleavage stimulation factor subun...610.00002     49.7     34     59GO:0071920; C:cleavage body; ISS:UniProtKB.::GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
176Q9SAB3    405   RB45B_ARATH Polyadenylate-binding protein RBP...790.0003     45.8     30     51GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0010193; P:response to ozone; IEP:TAIR.::GO:0006950; P:response to stress; IEA:UniProtKB-KW.
177Q5RDA3    577   CSTF2_PONAB Cleavage stimulation factor subun...520.00002     49.3     37     62GO:0071920; C:cleavage body; ISS:UniProtKB.::GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
178Q5SZQ8    465   CELF3_HUMAN CUGBP Elav-like family member 3 O...1230.00005     48.1     30     53GO:0005737; C:cytoplasm; IDA:UniProtKB.::GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0003729; F:mRNA binding; NAS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; NAS:UniProtKB.::GO:0048026; P:positive regulation of nuclear mRNA splicing, via spliceosome; IDA:UniProtKB.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IDA:UniProtKB.
179Q08E07    461   CELF3_BOVIN CUGBP Elav-like family member 3 O...1230.00005     48.1     30     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048026; P:positive regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
180Q8CIN6    465   CELF3_MOUSE CUGBP Elav-like family member 3 O...2073.6     32.7     22     40GO:0005737; C:cytoplasm; IDA:MGI.::GO:0005634; C:nucleus; IDA:MGI.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048026; P:positive regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0030317; P:sperm motility; IMP:MGI.::GO:0007283; P:spermatogenesis; IMP:MGI.
181Q6C2Q7    509   NOP12_YARLI Nucleolar protein 12 OS=lipolytic...620.00002     49.3     37     58GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
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