Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YIL038C
Length:
836
Number of sequences:
5887
Description:
YIL038C NOT3 SGDID:S000001300, Chr IX from 282652-280142, Genome Release 64-1-1, reverse complement, Verified ORF, "Subunit of the CCR4-NOT complex, which is a global transcriptional regulator with roles in transcription initiation and elongation and in mRNA degradation"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P06102    836   NOT3_YEAST General negative regulator of tran...8360     1721     100     100GO:0030015; C:CCR4-NOT core complex; IPI:SGD.::GO:0005737; C:cytoplasm; IDA:SGD.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; IDA:SGD.::GO:0032968; P:positive regulation of transcription elongation from RNA polymerase II promoter; IDA:SGD.::GO:0016567; P:protein ubiquitination; IMP:SGD.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
2O13870    640   NOT3_SCHPO General negative regulator of tran...800.0000007     56.6     33     51GO:0030015; C:CCR4-NOT core complex; ISS:PomBase.::GO:0005829; C:cytosol; IDA:PomBase.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; ISS:PomBase.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; ISS:PomBase.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
3O75175    753   CNOT3_HUMAN CCR4-NOT transcription complex su...930.00008     50.1     26     46GO:0000932; C:cytoplasmic mRNA processing body; ISS:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; TAS:Reactome.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
4Q8K0V4    751   CNOT3_MOUSE CCR4-NOT transcription complex su...930.00006     50.4     26     46GO:0000932; C:cytoplasmic mRNA processing body; IDA:UniProtKB.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
5Q12514    560   NOT5_YEAST General negative regulator of tran...3203e-43     169     37     57GO:0030015; C:CCR4-NOT core complex; IPI:SGD.::GO:0005737; C:cytoplasm; IDA:SGD.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0031087; P:deadenylation-independent decapping of nuclear-transcribed mRNA; IMP:SGD.::GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; IDA:SGD.::GO:0032968; P:positive regulation of transcription elongation from RNA polymerase II promoter; IDA:SGD.::GO:0016567; P:protein ubiquitination; IMP:SGD.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; IMP:SGD.
6Q80T03    2850   MUC6_MOUSE Mucin-6 OS=Mus musculus (Mouse). G...2373.1     35.4     25     41GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell.
7Q6C8M8    1456   ATG26_YARLI Sterol 3-beta-glucosyltransferase...1290.36     38.1     31     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
GO:0005543; F:phospholipid binding; IEA:InterPro.::GO:0016906; F:sterol 3-beta-glucosyltransferase activity; IEA:EC.
GO:0006914; P:autophagy; IEA:UniProtKB-KW.::GO:0030259; P:lipid glycosylation; IEA:InterPro.::GO:0015031; P:protein transport; IEA:UniProtKB-KW.::GO:0016126; P:sterol biosynthetic process; IEA:UniProtKB-KW.
8Q6BXN8    648   ATP25_DEBHA ATPase synthesis protein 25, mito...1000.47     37.7     25     53GO:0005743; C:mitochondrial inner membrane; IEA:UniProtKB-SubCell.
9P38042    758   CDC27_YEAST Anaphase-promoting complex subuni...1270.65     37.4     26     44GO:0005680; C:anaphase-promoting complex; IDA:SGD.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0031145; P:anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process; IDA:SGD.::GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0016567; P:protein ubiquitination; IDA:SGD.
10Q52JK6    603   VIP2_NICBE Probable NOT transcription complex...880.84     37     26     41GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0015074; P:DNA integration; IMP:UniProtKB.::GO:0006355; P:regulation of transcription, DNA-dependent; ISS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
11P00781    274   SUBD_BACLI Subtilisin DY OS=Bacillus lichenif...1451.7     35.4     28     41GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell.
GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0004252; F:serine-type endopeptidase activity; IEA:InterPro.
GO:0006508; P:proteolysis; IEA:UniProtKB-KW.::GO:0030435; P:sporulation resulting in formation of a cellular spore; IEA:UniProtKB-KW.
12Q9FPW4    614   VIP2_ARATH Probable NOT transcription complex...782.5     35.4     27     42GO:0005634; C:nucleus; IDA:TAIR.
GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0015074; P:DNA integration; IMP:TAIR.::GO:0006355; P:regulation of transcription, DNA-dependent; IEP:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
13A9F8L0    799   LON4_SORC5 Lon protease 4 OS=So ce56)). GN=lo...1202.8     35.4     27     52GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004176; F:ATP-dependent peptidase activity; IEA:InterPro.::GO:0004252; F:serine-type endopeptidase activity; IEA:InterPro.
GO:0006508; P:proteolysis; IEA:UniProtKB-KW.::GO:0006950; P:response to stress; IEA:UniProtKB-KW.
14O14213    380   MU185_SCHPO Meiotically up-regulated gene 185...754.3     34.3     35     47GO:0005783; C:endoplasmic reticulum; IDA:PomBase.
GO:0031072; F:heat shock protein binding; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0051082; F:unfolded protein binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0007126; P:meiosis; IEA:UniProtKB-KW.::GO:0006457; P:protein folding; IEA:InterPro.::GO:0042254; P:ribosome biogenesis; ISS:PomBase.
15P17842    339   TF3A_XENBO Transcription factor IIIA OS=Xenop...694.7     34.3     30     51GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
16Q28594    195   IFNT4_SHEEP Interferon tau-4 OS=Ovis aries (S...1004.9     33.5     24     48GO:0005615; C:extracellular space; IEA:UniProtKB-KW.
GO:0005125; F:cytokine activity; IEA:UniProtKB-KW.::GO:0005126; F:cytokine receptor binding; IEA:InterPro.::GO:0005179; F:hormone activity; IEA:UniProtKB-KW.
GO:0006952; P:defense response; IEA:InterPro.::GO:0007565; P:female pregnancy; IEA:UniProtKB-KW.::GO:0009615; P:response to virus; IEA:UniProtKB-KW.
17Q50EW2    2040   L_MPV15 RNA-directed RNA polymerase L OS=Muri...1166.7     34.3     26     44GO:0005737; C:cytoplasm; IEA:InterPro.::GO:0030430; C:host cell cytoplasm; IEA:UniProtKB-SubCell.::GO:0019012; C:virion; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004482; F:mRNA (guanine-N7-)-methyltransferase activity; IEA:EC.::GO:0003968; F:RNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
GO:0006370; P:mRNA capping; IEA:UniProtKB-KW.::GO:0032774; P:RNA biosynthetic process; IEA:UniProtKB-KW.
18Q9Y613    1164   FHOD1_HUMAN FH1/FH2 domain-containing protein...969.6     33.5     26     44GO:0032059; C:bleb; IEA:UniProtKB-SubCell.::GO:0005737; C:cytoplasm; IDA:HPA.::GO:0005856; C:cytoskeleton; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IDA:BHF-UCL.
GO:0003779; F:actin binding; IEA:UniProtKB-KW.
GO:0030036; P:actin cytoskeleton organization; IEA:InterPro.::GO:0051496; P:positive regulation of stress fiber assembly; IDA:BHF-UCL.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:BHF-UCL.
19Q04499    681   PROD_DROME Proline dehydrogenase 1, mitochond...1039.9     33.5     28     49GO:0005759; C:mitochondrial matrix; IEA:UniProtKB-SubCell.
GO:0071949; F:FAD binding; ISS:UniProtKB.::GO:0004657; F:proline dehydrogenase activity; IMP:FlyBase.
GO:0006537; P:glutamate biosynthetic process; IEA:InterPro.::GO:0007626; P:locomotory behavior; IMP:FlyBase.::GO:0042331; P:phototaxis; IMP:FlyBase.::GO:0006562; P:proline catabolic process; IMP:FlyBase.
records
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