rec. | Subject | Hit Length | Description | Align.Len | E value | Bit score | % ident. | % pos. | GO associations |
1 | P16370 | 318 | RPB3_YEAST DNA-directed RNA polymerase II sub... | 318 | 0 | 665 | 100 | 100 | GO:0005665; C:DNA-directed RNA polymerase II, core complex; IDA:SGD. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | GO:0006369; P:termination of RNA polymerase II transcription; IMP:SGD. | 2 | P37382 | 297 | RPB3_SCHPO DNA-directed RNA polymerase II sub... | 276 | 1e-106 | 320 | 53 | 75 | GO:0005829; C:cytosol; IDA:PomBase.::GO:0005665; C:DNA-directed RNA polymerase II, core complex; IMP:PomBase. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | GO:0006366; P:transcription from RNA polymerase II promoter; IC:PomBase. | 3 | Q3T0Q3 | 275 | RPB3_BOVIN DNA-directed RNA polymerase II sub... | 270 | 2e-71 | 229 | 46 | 64 | GO:0005665; C:DNA-directed RNA polymerase II, core complex; ISS:UniProtKB. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | GO:0006366; P:transcription from RNA polymerase II promoter; ISS:UniProtKB. | 4 | P19387 | 275 | RPB3_HUMAN DNA-directed RNA polymerase II sub... | 270 | 4e-71 | 228 | 46 | 64 | GO:0005665; C:DNA-directed RNA polymerase II, core complex; IDA:UniProtKB.::GO:0015630; C:microtubule cytoskeleton; IDA:HPA. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | GO:0006370; P:mRNA capping; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0050434; P:positive regulation of viral transcription; TAS:Reactome.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; TAS:Reactome.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; TAS:Reactome.::GO:0006283; P:transcription-coupled nucleotide-excision repair; TAS:Reactome.::GO:0016032; P:viral reproduction; TAS:Reactome. | 5 | P97760 | 275 | RPB3_MOUSE DNA-directed RNA polymerase II sub... | 270 | 4e-66 | 215 | 44 | 63 | GO:0005665; C:DNA-directed RNA polymerase II, core complex; ISS:UniProtKB. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | GO:0006366; P:transcription from RNA polymerase II promoter; ISS:UniProtKB. | 6 | Q39211 | 319 | RPB3A_ARATH DNA-directed RNA polymerase II su... | 292 | 5e-51 | 177 | 38 | 54 | GO:0005737; C:cytoplasm; IDA:TAIR.::GO:0005665; C:DNA-directed RNA polymerase II, core complex; IPI:TAIR.::GO:0000418; C:DNA-directed RNA polymerase IV complex; IPI:TAIR.::GO:0000419; C:DNA-directed RNA polymerase V complex; IPI:TAIR.::GO:0005730; C:nucleolus; IDA:TAIR. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | | 7 | Q54DH7 | 302 | RPB3_DICDI DNA-directed RNA polymerase II sub... | 283 | 6e-51 | 176 | 36 | 52 | GO:0005665; C:DNA-directed RNA polymerase II, core complex; ISS:dictyBase. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; ISS:dictyBase.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | GO:0006366; P:transcription from RNA polymerase II promoter; ISS:dictyBase. | 8 | Q39212 | 319 | RPB3B_ARATH DNA-directed RNA polymerase II su... | 299 | 7e-45 | 161 | 36 | 52 | GO:0005665; C:DNA-directed RNA polymerase II, core complex; IPI:TAIR.::GO:0000419; C:DNA-directed RNA polymerase V complex; IPI:TAIR. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | | 9 | P16925 | 310 | CNJC_TETTH Conjugation stage-specific protein... | 292 | 1e-36 | 139 | 32 | 49 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | | 10 | Q8TVB8 | 275 | RPOD_METKA DNA-directed RNA polymerase subuni... | 272 | 1e-26 | 110 | 31 | 47 | | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | | 11 | Q9V198 | 259 | RPOD_PYRAB DNA-directed RNA polymerase subuni... | 272 | 2e-24 | 103 | 32 | 46 | | | | | | | | | | | GO:0003677; F:DNA binding; IEA:HAMAP.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:HAMAP.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | | 12 | O26144 | 264 | RPOD_METTH DNA-directed RNA polymerase subuni... | 177 | 2e-24 | 103 | 35 | 55 | | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0051536; F:iron-sulfur cluster binding; IEA:InterPro.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | | 13 | P0CG28 | 266 | RPOD_METAC DNA-directed RNA polymerase subuni... | 186 | 5e-24 | 102 | 39 | 54 | | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0009055; F:electron carrier activity; IEA:InterPro.::GO:0051536; F:iron-sulfur cluster binding; IEA:InterPro.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | | 14 | Q8PV16 | 266 | RPOD_METMA DNA-directed RNA polymerase subuni... | 186 | 2e-23 | 101 | 38 | 54 | | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0009055; F:electron carrier activity; IEA:InterPro.::GO:0051536; F:iron-sulfur cluster binding; IEA:InterPro.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | | 15 | O59303 | 259 | RPOD_PYRHO DNA-directed RNA polymerase subuni... | 277 | 4e-23 | 100 | 30 | 46 | | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | | 16 | Q2NFZ6 | 270 | RPOD_METST DNA-directed RNA polymerase subuni... | 176 | 4e-23 | 100 | 34 | 53 | | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | | 17 | A1RSE3 | 262 | RPOD_PYRIL DNA-directed RNA polymerase subuni... | 266 | 8e-23 | 99.4 | 32 | 47 | | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | | 18 | Q8U0E4 | 261 | RPOD_PYRFU DNA-directed RNA polymerase subuni... | 292 | 1e-22 | 99 | 28 | 44 | | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | | 19 | B1YC30 | 262 | RPOD_THENV DNA-directed RNA polymerase subuni... | 266 | 2e-22 | 98.2 | 32 | 47 | | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | | 20 | Q5JJF4 | 259 | RPOD_PYRKO DNA-directed RNA polymerase subuni... | 273 | 3e-22 | 97.8 | 28 | 43 | | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | | 21 | Q8ZYQ3 | 260 | RPOD_PYRAE DNA-directed RNA polymerase subuni... | 161 | 2e-21 | 95.1 | 41 | 57 | | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | | 22 | P52432 | 346 | RPAC1_MOUSE DNA-directed RNA polymerases I an... | 306 | 4e-21 | 95.1 | 28 | 45 | GO:0005654; C:nucleoplasm; TAS:Reactome. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | | 23 | O15160 | 346 | RPAC1_HUMAN DNA-directed RNA polymerases I an... | 194 | 6e-20 | 92 | 31 | 53 | GO:0005736; C:DNA-directed RNA polymerase I complex; TAS:ProtInc.::GO:0005654; C:nucleoplasm; TAS:Reactome. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; TAS:ProtInc.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | GO:0006363; P:termination of RNA polymerase I transcription; TAS:Reactome.::GO:0006386; P:termination of RNA polymerase III transcription; TAS:Reactome.::GO:0006362; P:transcription elongation from RNA polymerase I promoter; TAS:Reactome.::GO:0006385; P:transcription elongation from RNA polymerase III promoter; TAS:Reactome.::GO:0006361; P:transcription initiation from RNA polymerase I promoter; TAS:Reactome. | 24 | Q54SN4 | 345 | RPAC1_DICDI DNA-directed RNA polymerases I an... | 189 | 7e-20 | 91.7 | 30 | 53 | GO:0005736; C:DNA-directed RNA polymerase I complex; ISS:dictyBase.::GO:0005666; C:DNA-directed RNA polymerase III complex; ISS:dictyBase. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; ISS:dictyBase.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | GO:0006360; P:transcription from RNA polymerase I promoter; ISS:dictyBase.::GO:0006383; P:transcription from RNA polymerase III promoter; ISS:dictyBase. | 25 | Q32L22 | 346 | RPAC1_BOVIN DNA-directed RNA polymerases I an... | 194 | 9e-20 | 91.3 | 31 | 53 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | | 26 | O28002 | 264 | RPOD_ARCFU DNA-directed RNA polymerase subuni... | 183 | 9e-20 | 90.5 | 30 | 50 | | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0009055; F:electron carrier activity; IEA:InterPro.::GO:0051536; F:iron-sulfur cluster binding; IEA:InterPro.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | | 27 | Q6KZP5 | 271 | RPOD_PICTO DNA-directed RNA polymerase subuni... | 206 | 3e-19 | 89 | 31 | 53 | | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | | 28 | A4WNA4 | 259 | RPOD_PYRAR DNA-directed RNA polymerase subuni... | 177 | 5e-19 | 88.2 | 40 | 55 | | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | | 29 | O94616 | 348 | RPAC1_SCHPO DNA-directed RNA polymerases I an... | 193 | 2e-18 | 87.4 | 31 | 52 | GO:0005829; C:cytosol; IDA:PomBase.::GO:0005736; C:DNA-directed RNA polymerase I complex; IGI:PomBase.::GO:0005666; C:DNA-directed RNA polymerase III complex; IGI:PomBase. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | GO:0070317; P:negative regulation of G0 to G1 transition; IMP:PomBase.::GO:0006360; P:transcription from RNA polymerase I promoter; IGI:PomBase.::GO:0006383; P:transcription from RNA polymerase III promoter; IGI:PomBase. | 30 | P07703 | 335 | RPAC1_YEAST DNA-directed RNA polymerases I an... | 292 | 5e-18 | 86.3 | 25 | 44 | GO:0005736; C:DNA-directed RNA polymerase I complex; IDA:SGD.::GO:0005666; C:DNA-directed RNA polymerase III complex; IDA:SGD. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | GO:0006360; P:transcription from RNA polymerase I promoter; IC:SGD.::GO:0042797; P:tRNA transcription from RNA polymerase III promoter; IDA:SGD. | 31 | Q57648 | 191 | RPOD_METJA DNA-directed RNA polymerase subuni... | 178 | 5e-18 | 84 | 33 | 48 | | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | |