Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YHR156C
Length:
340
Number of sequences:
5887
Description:
YHR156C LIN1 SGDID:S000001199, Chr VIII from 412406-411384, Genome Release 64-1-1, reverse complement, Verified ORF, "Non-essential component of U5 snRNP; nuclear protein; physically interacts with Irr1p of cohesin complex; may link together proteins involved in chromosome segregation, mRNA splicing and DNA replication"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P38852    340   LIN1_YEAST Protein LIN1 OS=Saccharomyces cere...3400     684     100     100GO:0000785; C:chromatin; IDA:SGD.::GO:0005682; C:U5 snRNP; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.
2Q9VKV5    319   LIN1_DROME LIN1-like protein OS=Drosophila me...2700.0000001     56.2     27     46
GO:0006911; P:phagocytosis, engulfment; IMP:FlyBase.
3Q9CWK3    342   CD2B2_MOUSE CD2 antigen cytoplasmic tail-bind...2450.00006     48.1     24     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0010923; P:negative regulation of phosphatase activity; ISS:UniProtKB.
4O94693    408   LIN1_SCHPO LIN1-like protein OS=Schizosacchar...2920.0006     45.1     24     42GO:0000790; C:nuclear chromatin; ISS:PomBase.::GO:0005682; C:U5 snRNP; ISS:PomBase.
5O95400    341   CD2B2_HUMAN CD2 antigen cytoplasmic tail-bind...450.027     39.7     44     60GO:0005737; C:cytoplasm; TAS:ProtInc.::GO:0005654; C:nucleoplasm; IDA:BHF-UCL.::GO:0005682; C:U5 snRNP; IDA:BHF-UCL.
GO:0005515; F:protein binding; IPI:BHF-UCL.::GO:0043021; F:ribonucleoprotein complex binding; IDA:BHF-UCL.
GO:0000244; P:assembly of spliceosomal tri-snRNP; NAS:BHF-UCL.::GO:0010923; P:negative regulation of phosphatase activity; IDA:UniProtKB.
6Q9Z3Q9    196   RHBD_RHIME Rhizobactin siderophore biosynthes...386.8     31.6     32     53
7Q18B66    401   EX7L_CLOD6 Exodeoxyribonuclease 7 large subun...1618.8     32     25     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0009318; C:exodeoxyribonuclease VII complex; IEA:InterPro.
GO:0008855; F:exodeoxyribonuclease VII activity; IEA:EC.
GO:0006308; P:DNA catabolic process; IEA:InterPro.
records
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