Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YHR120W
Length:
959
Number of sequences:
5887
Description:
YHR120W MSH1 SGDID:S000001162, Chr VIII from 349574-352453, Genome Release 64-1-1, Verified ORF, "DNA-binding protein of the mitochondria involved in repair of mitochondrial DNA, has ATPase activity and binds to DNA mismatches; has homology to E. coli MutS; transcription is induced during meiosis"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
811P49960    444   PRP24_YEAST U4/U6 snRNA-associated-splicing f...1020.85     37     28     48GO:0005688; C:U6 snRNP; IDA:SGD.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017070; F:U6 snRNA binding; IDA:SGD.
GO:0000244; P:assembly of spliceosomal tri-snRNP; IDA:SGD.::GO:0000245; P:spliceosomal complex assembly; IMP:SGD.
812O25338    762   MUTS2_HELPY MutS2 protein OS=pylori). GN=mutS...1491.4     36.6     28     45
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003684; F:damaged DNA binding; IEA:InterPro.::GO:0030983; F:mismatched DNA binding; IEA:InterPro.
GO:0045005; P:maintenance of fidelity involved in DNA-dependent DNA replication; IEA:InterPro.::GO:0006298; P:mismatch repair; IEA:InterPro.
813Q9ZLL4    762   MUTS2_HELPJ MutS2 protein OS=Helicobacter pyl...1491.6     36.2     28     45
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003684; F:damaged DNA binding; IEA:InterPro.::GO:0030983; F:mismatched DNA binding; IEA:InterPro.
GO:0045005; P:maintenance of fidelity involved in DNA-dependent DNA replication; IEA:InterPro.::GO:0006298; P:mismatch repair; IEA:InterPro.
814B5YM03    205   CYNS_THAPS Cyanate hydratase OS=Thalassiosira...661.9     35     35     47
GO:0008824; F:cyanate hydratase activity; IEA:EC.::GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
GO:0009439; P:cyanate metabolic process; IEA:InterPro.
815Q4WG58    1467   PAN1_ASPFU Actin cytoskeleton-regulatory comp...1162.4     35.8     28     50GO:0030479; C:actin cortical patch; IEA:UniProtKB-SubCell.::GO:0010008; C:endosome membrane; IEA:UniProtKB-SubCell.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO:0003779; F:actin binding; IEA:UniProtKB-KW.::GO:0005509; F:calcium ion binding; IEA:InterPro.
GO:0006897; P:endocytosis; IEA:UniProtKB-KW.
816B0YC95    1467   PAN1_ASPFC Actin cytoskeleton-regulatory comp...1162.6     35.8     28     50GO:0030479; C:actin cortical patch; IEA:UniProtKB-SubCell.::GO:0010008; C:endosome membrane; IEA:UniProtKB-SubCell.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO:0003779; F:actin binding; IEA:UniProtKB-KW.::GO:0005509; F:calcium ion binding; IEA:InterPro.
GO:0006897; P:endocytosis; IEA:UniProtKB-KW.
817P16960    5035   RYR1_PIG Ryanodine receptor 1 OS=Sus scrofa (...842.6     35.8     29     44GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0033017; C:sarcoplasmic reticulum membrane; ISS:UniProtKB.
GO:0005509; F:calcium ion binding; IEA:InterPro.::GO:0005516; F:calmodulin binding; IEA:UniProtKB-KW.::GO:0004872; F:receptor activity; IEA:UniProtKB-KW.::GO:0005219; F:ryanodine-sensitive calcium-release channel activity; ISS:UniProtKB.::GO:0005245; F:voltage-gated calcium channel activity; ISS:UniProtKB.
GO:0071313; P:cellular response to caffeine; ISS:UniProtKB.::GO:0006936; P:muscle contraction; ISS:UniProtKB.::GO:0043931; P:ossification involved in bone maturation; ISS:UniProtKB.::GO:0003151; P:outflow tract morphogenesis; ISS:UniProtKB.::GO:0014808; P:release of sequestered calcium ion into cytosol by sarcoplasmic reticulum; ISS:UniProtKB.::GO:0048741; P:skeletal muscle fiber development; ISS:UniProtKB.::GO:0043588; P:skin development; ISS:UniProtKB.
818B0LPN4    4953   RYR2_RAT Ryanodine receptor 2 OS=Rattus norve...904.4     35     27     46GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0043234; C:protein complex; IDA:RGD.::GO:0033017; C:sarcoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0019717; C:synaptosome; IDA:RGD.::GO:0030018; C:Z disc; IDA:RGD.
GO:0005509; F:calcium ion binding; IEA:InterPro.::GO:0005516; F:calmodulin binding; IEA:UniProtKB-KW.::GO:0004872; F:receptor activity; IEA:UniProtKB-KW.::GO:0005219; F:ryanodine-sensitive calcium-release channel activity; IEA:InterPro.
GO:0019722; P:calcium-mediated signaling; ISS:UniProtKB.::GO:0071313; P:cellular response to caffeine; ISS:UniProtKB.::GO:0051480; P:cytosolic calcium ion homeostasis; IMP:RGD.::GO:0003143; P:embryonic heart tube morphogenesis; ISS:UniProtKB.::GO:0051592; P:response to calcium ion; IDA:RGD.::GO:0042493; P:response to drug; IEP:RGD.::GO:0032026; P:response to magnesium ion; IDA:RGD.::GO:0007584; P:response to nutrient; IEP:RGD.
819A1SQW3    444   HSLU_PSYIN ATP-dependent protease ATPase subu...708.2     33.9     34     49GO:0009376; C:HslUV protease complex; IEA:InterPro.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0016887; F:ATPase activity; IEA:InterPro.::GO:0070011; F:peptidase activity, acting on L-amino acid peptides; IEA:InterPro.
GO:0006950; P:response to stress; IEA:UniProtKB-KW.
records
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