Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
Home About FGC Use Cases Species List

UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YHR088W
Length:
295
Number of sequences:
5887
Description:
YHR088W RPF1 SGDID:S000001130, Chr VIII from 281495-282382, Genome Release 64-1-1, Verified ORF, "Nucleolar protein involved in the assembly and export of the large ribosomal subunit; constituent of 66S pre-ribosomal particles; contains a sigma(70)-like motif, which is thought to bind RNA"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P38805    295   RPF1_YEAST Ribosome production factor 1 OS=Sa...2950     598     100     100GO:0005730; C:nucleolus; IDA:SGD.::GO:0030687; C:preribosome, large subunit precursor; IDA:SGD.
GO:0042134; F:rRNA primary transcript binding; IPI:SGD.
GO:0000466; P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000463; P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000027; P:ribosomal large subunit assembly; IPI:SGD.::GO:0000055; P:ribosomal large subunit export from nucleus; IMP:SGD.
2O14180    306   YDS4_SCHPO Brix domain-containing protein C4F...3041e-82     258     45     66GO:0005730; C:nucleolus; IDA:PomBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:PomBase.
GO:0042134; F:rRNA primary transcript binding; ISS:PomBase.
GO:0000466; P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:PomBase.::GO:0000463; P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:PomBase.::GO:0000027; P:ribosomal large subunit assembly; ISS:PomBase.
3Q8AVP1    343   RPF1_XENLA Ribosome production factor 1 OS=Xe...2993e-73     235     47     65GO:0005730; C:nucleolus; ISS:UniProtKB.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
4Q5R631    349   RPF1_PONAB Ribosome production factor 1 OS=Po...2523e-72     232     50     65GO:0005730; C:nucleolus; ISS:UniProtKB.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
5Q9H9Y2    349   RPF1_HUMAN Ribosome production factor 1 OS=Ho...2524e-72     232     50     65GO:0005730; C:nucleolus; IDA:UniProtKB.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
6Q7TND5    349   RPF1_MOUSE Ribosome production factor 1 OS=Mu...2526e-72     231     49     65GO:0005730; C:nucleolus; ISS:UniProtKB.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
7Q5RJS9    345   RPF1_RAT Ribosome production factor 1 OS=Ratt...2863e-69     224     45     61GO:0005730; C:nucleolus; ISS:UniProtKB.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
8Q6IQU6    330   RPF1_DANRE Ribosome production factor 1 OS=Da...2522e-68     222     47     66GO:0005730; C:nucleolus; ISS:UniProtKB.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
9P54073    384   YUY1_CAEEL Brix domain-containing protein F44...2622e-57     195     42     60
GO:0040007; P:growth; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0040010; P:positive regulation of growth rate; IMP:WormBase.::GO:0006898; P:receptor-mediated endocytosis; IMP:WormBase.
10Q9VKB4    394   RPF1_DROME Probable ribosome production facto...2381e-46     167     43     58GO:0005730; C:nucleolus; ISS:UniProtKB.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
11Q0VD01    291   IMP4_BOVIN U3 small nucleolar ribonucleoprote...2746e-28     114     30     47GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
12Q5PQR5    291   IMP4_RAT U3 small nucleolar ribonucleoprotein...2698e-28     113     30     47GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
13Q8VHZ7    291   IMP4_MOUSE U3 small nucleolar ribonucleoprote...2698e-28     113     30     47GO:0005730; C:nucleolus; ISS:HGNC.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; TAS:MGI.
14Q5R947    291   IMP4_PONAB U3 small nucleolar ribonucleoprote...2741e-27     112     30     47GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
15Q96G21    291   IMP4_HUMAN U3 small nucleolar ribonucleoprote...2742e-27     112     30     47GO:0005730; C:nucleolus; IDA:HGNC.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:HGNC.
GO:0006364; P:rRNA processing; NAS:HGNC.
16P53941    290   IMP4_YEAST U3 small nucleolar ribonucleoprote...2378e-27     110     31     50GO:0034457; C:Mpp10 complex; IDA:SGD.::GO:0032040; C:small-subunit processome; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0042134; F:rRNA primary transcript binding; IPI:SGD.::GO:0043047; F:single-stranded telomeric DNA binding; IDA:SGD.::GO:0030515; F:snoRNA binding; IDA:SGD.
GO:0006364; P:rRNA processing; TAS:SGD.
17Q755T8    283   IMP4_ASHGO U3 small nucleolar ribonucleoprote...2348e-26     107     31     49GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
18Q6FNN7    288   IMP4_CANGA U3 small nucleolar ribonucleoprote...2352e-25     106     29     51GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
19Q6C804    283   IMP4_YARLI U3 small nucleolar ribonucleoprote...2401e-24     104     30     48GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
20O62518    292   YHPK_CAEEL Brix domain-containing protein ZK7...2082e-23     101     29     49
GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0040007; P:growth; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0040010; P:positive regulation of growth rate; IMP:WormBase.::GO:0006898; P:receptor-mediated endocytosis; IMP:WormBase.::GO:0000003; P:reproduction; IMP:WormBase.
21O13823    289   IMP4_SCHPO U3 small nucleolar ribonucleoprote...2252e-22     98.6     30     47GO:0005730; C:nucleolus; IDA:PomBase.::GO:0032040; C:small-subunit processome; ISS:PomBase.
GO:0003723; F:RNA binding; ISS:PomBase.
GO:0006364; P:rRNA processing; ISS:PomBase.
22Q6BYD9    284   IMP4_DEBHA U3 small nucleolar ribonucleoprote...2915e-22     97.1     26     45GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
23Q91YU8    470   SSF1_MOUSE Suppressor of SWI4 1 homolog OS=Mu...1380.1     37.7     22     46GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
24Q54DJ0    307   RPF2_DICDI Ribosome production factor 2 homol...1323.2     32.7     23     45GO:0005730; C:nucleolus; ISS:dictyBase.
GO:0019843; F:rRNA binding; ISS:dictyBase.
GO:0000027; P:ribosomal large subunit assembly; ISS:dictyBase.
25P34524    352   BRX1_CAEEL Ribosome biogenesis protein BRX1 h...1553.4     32.7     26     45GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0007276; P:gamete generation; IMP:WormBase.::GO:0040007; P:growth; IMP:WormBase.::GO:0040035; P:hermaphrodite genitalia development; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0040010; P:positive regulation of growth rate; IMP:WormBase.::GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
26Q9VDE5    460   PPAN_DROME Protein Peter pan OS=Drosophila me...1014.6     32.3     23     43
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0007444; P:imaginal disc development; IMP:UniProtKB.::GO:0002164; P:larval development; IMP:UniProtKB.::GO:0048477; P:oogenesis; IEA:UniProtKB-KW.
records
Previous ‹‹ ›› Next Total records: 26 1 - 26
Elimate unknown annotation:
Filter for keyword on hit description:
Select upper E value:
Select lower bit score:
Select lower %idenity value:
Select lower %positive value:
Taxonomic division:
Lower limit on hit length:
Lower limit on alignment length::