Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YHR069C
Length:
359
Number of sequences:
5887
Description:
YHR069C RRP4 SGDID:S000001111, Chr VIII from 234658-233579, Genome Release 64-1-1, reverse complement, Verified ORF, "Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; predicted to contain RNA binding domains; has similarity to human hRrp4p (EXOSC2)"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P38792    359   RRP4_YEAST Exosome complex component RRP4 OS=...3590     739     100     100GO:0000177; C:cytoplasmic exosome (RNase complex); IDA:SGD.::GO:0000176; C:nuclear exosome (RNase complex); IDA:SGD.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000467; P:exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0070651; P:nonfunctional rRNA decay; IC:SGD.::GO:0071042; P:nuclear polyadenylation-dependent mRNA catabolic process; IC:SGD.::GO:0071035; P:nuclear polyadenylation-dependent rRNA catabolic process; IMP:SGD.::GO:0071038; P:nuclear polyadenylation-dependent tRNA catabolic process; IDA:SGD.::GO:0071049; P:nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription; IGI:SGD.::GO:0070478; P:nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay; IC:SGD.::GO:0070481; P:nuclear-transcribed mRNA catabolic process, non-stop decay; IC:SGD.::GO:0071051; P:polyadenylation-dependent snoRNA 3'-end processing; IMP:SGD.::GO:0034475; P:U4 snRNA 3'-end processing; IMP:SGD.
2Q09704    329   RRP4_SCHPO Exosome complex component rrp4 OS=...2961e-102     312     54     69GO:0000177; C:cytoplasmic exosome (RNase complex); ISS:PomBase.::GO:0005829; C:cytosol; IDA:PomBase.::GO:0000176; C:nuclear exosome (RNase complex); ISS:PomBase.::GO:0005816; C:spindle pole body; IDA:PomBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000467; P:exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:PomBase.::GO:0070651; P:nonfunctional rRNA decay; ISS:PomBase.::GO:0071042; P:nuclear polyadenylation-dependent mRNA catabolic process; ISS:PomBase.::GO:0071035; P:nuclear polyadenylation-dependent rRNA catabolic process; ISS:PomBase.::GO:0071038; P:nuclear polyadenylation-dependent tRNA catabolic process; ISS:PomBase.::GO:0070478; P:nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay; ISS:PomBase.::GO:0070481; P:nuclear-transcribed mRNA catabolic process, non-stop decay; ISS:PomBase.
3Q2KID0    293   EXOS2_BOVIN Exosome complex component RRP4 OS...2963e-67     220     42     57GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); ISS:UniProtKB.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
4Q13868    293   EXOS2_HUMAN Exosome complex component RRP4 OS...2962e-66     218     42     57GO:0005829; C:cytosol; TAS:Reactome.::GO:0000178; C:exosome (RNase complex); IDA:UniProtKB.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; TAS:ProtInc.::GO:0008312; F:7S RNA binding; TAS:ProtInc.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0030307; P:positive regulation of cell growth; IMP:UniProtKB.::GO:0006364; P:rRNA processing; TAS:ProtInc.
5Q8VBV3    293   EXOS2_MOUSE Exosome complex component RRP4 OS...2966e-66     216     41     57GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); ISS:UniProtKB.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
6Q8U0L8    264   ECR1_PYRFU Probable exosome complex RNA-bindi...1914e-18     85.9     29     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
7Q5JIR5    257   ECR1_PYRKO Probable exosome complex RNA-bindi...1903e-17     83.6     29     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
8Q9V120    265   ECR1_PYRAB Probable exosome complex RNA-bindi...1923e-17     83.6     28     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:HAMAP.
GO:0006401; P:RNA catabolic process; IEA:HAMAP.
9O59221    265   ECR1_PYRHO Probable exosome complex RNA-bindi...1923e-16     81.3     28     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
10A1RXQ7    237   ECR1_THEPD Probable exosome complex RNA-bindi...1820.00000000000002     75.1     31     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
11A5UJS0    298   ECR1_METS3 Probable exosome complex RNA-bindi...2010.00000000000007     74.7     28     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
12E3GZ90    222   ECR1_METFV Probable exosome complex RNA-bindi...1980.0000000000005     71.2     27     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
13Q9HIP3    236   ECR1_THEAC Probable exosome complex RNA-bindi...1920.000000000001     70.5     29     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
14Q8TYC0    239   ECR1_METKA Probable exosome complex RNA-bindi...2160.000000000002     69.7     26     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
15Q97BZ6    236   ECR1_THEVO Probable exosome complex RNA-bindi...1920.000000000003     69.3     29     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
16O29758    223   ECR1_ARCFU Probable exosome complex RNA-bindi...1960.000000000004     68.2     29     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
17O26780    311   ECR1_METTH Probable exosome complex RNA-bindi...2010.000000000006     69.3     26     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
18Q2NEX6    222   ECR1_METST Probable exosome complex RNA-bindi...1890.000000000006     67.8     30     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
19Q8PTT9    260   ECR1_METMA Probable exosome complex RNA-bindi...1890.00000000002     67     30     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
20Q975G7    247   ECR1_SULTO Probable exosome complex RNA-bindi...2010.00000000003     66.2     26     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
21Q6L222    230   ECR1_PICTO Probable exosome complex RNA-bindi...1970.00000000006     65.1     25     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
22Q12ZB8    263   ECR1_METBU Probable exosome complex RNA-bindi...1970.0000000003     63.5     26     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
23Q8TPX7    260   ECR1_METAC Probable exosome complex RNA-bindi...1890.000000008     59.3     28     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
24Q8ZVM8    235   ECR1_PYRAE Probable exosome complex RNA-bindi...1910.00000003     57.4     26     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
25Q469M4    260   ECR1_METBF Probable exosome complex RNA-bindi...1890.00000008     56.2     26     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
26Q4JB26    249   ECR1_SULAC Probable exosome complex RNA-bindi...1670.000001     52.8     26     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
27D5U396    247   ECR1_THEAM Probable exosome complex RNA-bindi...2090.000002     52.4     23     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
28Q9UXC4    249   ECR1_SULSO Probable exosome complex RNA-bindi...1880.000007     50.4     25     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
29B1L6N8    228   ECR1_KORCO Probable exosome complex RNA-bindi...2560.00002     48.9     23     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
30E0SQX5    253   ECR1_IGNAA Probable exosome complex RNA-bindi...2110.00002     48.9     24     41GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
31A9A5C8    226   ECR1_NITMS Probable exosome complex RNA-bindi...1850.00005     47.8     26     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
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