Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YHR015W
Length:
659
Number of sequences:
5887
Description:
YHR015W MIP6 SGDID:S000001057, Chr VIII from 134554-136533, Genome Release 64-1-1, Verified ORF, "Putative RNA-binding protein, interacts with Mex67p, which is a component of the nuclear pore involved in nuclear mRNA export"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
571Q1HE01    154   NCBP2_BOMMO Nuclear cap-binding protein subun...774.9     32.7     27     48GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0031047; P:gene silencing by RNA; IEA:UniProtKB-KW.::GO:0006370; P:mRNA capping; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
572B4Q0Y7    269   EI3G1_DROYA Eukaryotic translation initiation...595     33.5     31     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
573B3P935    269   EI3G1_DROER Eukaryotic translation initiation...595     33.5     31     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
574B4MA85    269   EI3G1_DROVI Eukaryotic translation initiation...595     33.5     31     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
575O14979    420   HNRDL_HUMAN Heterogeneous nuclear ribonucleop...575.1     33.9     30     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0030530; C:heterogeneous nuclear ribonucleoprotein complex; TAS:ProtInc.
GO:0003690; F:double-stranded DNA binding; TAS:ProtInc.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; TAS:ProtInc.::GO:0003697; F:single-stranded DNA binding; TAS:ProtInc.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006396; P:RNA processing; TAS:ProtInc.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
576Q29GU0    269   EI3G1_DROPS Eukaryotic translation initiation...595.2     33.5     31     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
577B4GUY6    269   EI3G1_DROPE Eukaryotic translation initiation...595.2     33.5     31     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
578B4N1L0    269   EI3G1_DROWI Eukaryotic translation initiation...595.3     33.5     31     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
579B4NTY9    269   EI3G1_DROSI Eukaryotic translation initiation...595.4     33.5     31     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
580B4I9X1    269   EI3G1_DROSE Eukaryotic translation initiation...595.4     33.5     31     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
581Q5R5W2    414   TADBP_PONAB TAR DNA-binding protein 43 OS=Pon...865.9     33.5     27     50GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
582Q13148    414   TADBP_HUMAN TAR DNA-binding protein 43 OS=Hom...865.9     33.5     27     50GO:0005634; C:nucleus; IDA:BHF-UCL.
GO:0003690; F:double-stranded DNA binding; IDA:BHF-UCL.::GO:0003730; F:mRNA 3'-UTR binding; IDA:BHF-UCL.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; TAS:ProtInc.
GO:0070935; P:3'-UTR-mediated mRNA stabilization; IDA:BHF-UCL.::GO:0008219; P:cell death; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0043922; P:negative regulation by host of viral transcription; IDA:BHF-UCL.::GO:0008380; P:RNA splicing; IDA:BHF-UCL.::GO:0006366; P:transcription from RNA polymerase II promoter; TAS:ProtInc.
583Q80YR9    836   R12BA_MOUSE RNA-binding protein 12B-A OS=Mus ...785.9     33.9     26     53
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
584B4M205    154   NCB2A_DROVI Nuclear cap-binding protein subun...796     32.7     24     48GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0031047; P:gene silencing by RNA; IEA:UniProtKB-KW.::GO:0006370; P:mRNA capping; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
585B3P0D7    154   NCBP2_DROER Nuclear cap-binding protein subun...796.2     32.3     25     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0031047; P:gene silencing by RNA; IEA:UniProtKB-KW.::GO:0006370; P:mRNA capping; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
586Q7TP17    220   U2AF4_RAT Splicing factor U2AF 26 kDa subunit...596.4     33.1     36     51GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
587Q8BGJ9    220   U2AF4_MOUSE Splicing factor U2AF 26 kDa subun...596.4     33.1     36     51GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
588P34761    661   WHI3_YEAST Protein WHI3 OS=Saccharomyces cere...986.5     33.5     26     46GO:0005737; C:cytoplasm; IDA:SGD.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IMP:SGD.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0051220; P:cytoplasmic sequestering of protein; IMP:SGD.::GO:0001403; P:invasive growth in response to glucose limitation; IMP:SGD.::GO:0007124; P:pseudohyphal growth; IMP:SGD.::GO:0008361; P:regulation of cell size; IMP:SGD.
589P92964    264   RSP31_ARATH Arginine/serine-rich-splicing fac...1656.5     33.1     22     42GO:0016607; C:nuclear speck; IDA:TAIR.::GO:0005681; C:spliceosomal complex; TAS:TAIR.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IDA:TAIR.
590A6QPR6    394   RFOX2_BOVIN RNA binding protein fox-1 homolog...727     33.5     24     57GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.::GO:0003714; F:transcription corepressor activity; ISS:UniProtKB.::GO:0008134; F:transcription factor binding; ISS:UniProtKB.
GO:0030520; P:intracellular estrogen receptor signaling pathway; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0045892; P:negative regulation of transcription, DNA-dependent; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
591P26596    301   MCP_BPF41 Major capsid protein OS=Lactococcus...947.1     33.1     27     47GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
GO:0004180; F:carboxypeptidase activity; IEA:InterPro.
592P40561    250   SGN1_YEAST RNA-binding protein SGN1 OS=Saccha...497.1     33.1     33     49GO:0005737; C:cytoplasm; IDA:SGD.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:SGD.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0016071; P:mRNA metabolic process; IGI:SGD.
593Q8H0T4    3658   UPL2_ARATH E3 ubiquitin-protein ligase UPL2 O...947.3     33.5     30     50GO:0005829; C:cytosol; IDA:TAIR.::GO:0005739; C:mitochondrion; IDA:TAIR.::GO:0005634; C:nucleus; IDA:TAIR.
GO:0016881; F:acid-amino acid ligase activity; IEA:InterPro.::GO:0005488; F:binding; IEA:InterPro.
GO:0006464; P:protein modification process; IEA:InterPro.
594O43251    390   RFOX2_HUMAN RNA binding protein fox-1 homolog...727.6     33.1     24     57GO:0005737; C:cytoplasm; IDA:HPA.::GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IDA:UniProtKB.::GO:0003714; F:transcription corepressor activity; IDA:UniProtKB.::GO:0008134; F:transcription factor binding; IDA:UniProtKB.
GO:0030520; P:intracellular estrogen receptor signaling pathway; IDA:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0045892; P:negative regulation of transcription, DNA-dependent; IDA:UniProtKB.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; ISS:BHF-UCL.::GO:0042127; P:regulation of cell proliferation; TAS:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
595P53830    285   CUS2_YEAST Cold sensitive U2 snRNA suppressor...947.6     33.1     30     48GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005686; C:U2 snRNP; TAS:SGD.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IMP:SGD.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.
596P98179    157   RBM3_HUMAN Putative RNA-binding protein 3 OS=...617.9     32.3     26     52GO:0030425; C:dendrite; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; TAS:ProtInc.
GO:0045727; P:positive regulation of translation; ISS:UniProtKB.
597Q925G0    155   RBM3_RAT Putative RNA-binding protein 3 OS=Ra...617.9     32.3     25     51GO:0005737; C:cytoplasm; IDA:UniProtKB.::GO:0030425; C:dendrite; IDA:UniProtKB.::GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0045727; P:positive regulation of translation; IDA:UniProtKB.
598Q642J5    373   RFOX1_DANRE RNA binding protein fox-1 homolog...728.1     33.1     24     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0021854; P:hypothalamus development; IMP:ZFIN.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
599Q28F51    409   TADBP_XENTR TAR DNA-binding protein 43 OS=Xen...568.5     33.1     34     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
600Q09295    191   YQO4_CAEEL Putative RNA-binding protein EEED8...578.5     32.3     32     49
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
601Q9USY2    1014   YOW4_SCHPO Uncharacterized RNA-binding protei...1248.7     33.5     26     40GO:0005688; C:U6 snRNP; ISS:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; ISS:PomBase.
GO:0000244; P:assembly of spliceosomal tri-snRNP; ISS:PomBase.::GO:0000245; P:spliceosomal complex assembly; ISS:PomBase.
records
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