Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YHR015W
Length:
659
Number of sequences:
5887
Description:
YHR015W MIP6 SGDID:S000001057, Chr VIII from 134554-136533, Genome Release 64-1-1, Verified ORF, "Putative RNA-binding protein, interacts with Mex67p, which is a component of the nuclear pore involved in nuclear mRNA export"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
181B4PIS2    582   SHEP_DROYA Protein alan shepard OS=Drosophila...1640.0002     48.1     26     43
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0009629; P:response to gravity; ISS:UniProtKB.
182Q3ZC34    407   RBMS2_BOVIN RNA-binding motif, single-strande...1570.0002     48.1     25     44GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
183Q5ZJX4    215   RBM38_CHICK RNA-binding protein 38 OS=Gallus ...700.0002     46.6     36     51GO:0005829; C:cytosol; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
184Q8MSV2    578   SHEP_DROME Protein alan shepard OS=Drosophila...1640.0002     48.1     26     43
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0009629; P:response to gravity; IMP:UniProtKB.
185O93235    166   CIRBA_XENLA Cold-inducible RNA-binding protei...770.0002     45.8     30     52GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0019899; F:enzyme binding; ISS:UniProtKB.::GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0070181; F:SSU rRNA binding; ISS:UniProtKB.::GO:0030371; F:translation repressor activity; ISS:UniProtKB.
GO:0016477; P:cell migration; IMP:UniProtKB.::GO:0007369; P:gastrulation; IMP:UniProtKB.::GO:0072004; P:kidney field specification; IMP:UniProtKB.::GO:0048255; P:mRNA stabilization; ISS:UniProtKB.::GO:0060212; P:negative regulation of nuclear-transcribed mRNA poly(A) tail shortening; ISS:UniProtKB.::GO:0022008; P:neurogenesis; IMP:UniProtKB.::GO:0045727; P:positive regulation of translation; ISS:UniProtKB.::GO:0048793; P:pronephros development; IMP:UniProtKB.::GO:0009409; P:response to cold; IEP:UniProtKB.::GO:0009411; P:response to UV; ISS:UniProtKB.::GO:0034063; P:stress granule assembly; ISS:UniProtKB.
186B4HUE4    579   SHEP_DROSE Protein alan shepard OS=Drosophila...1640.0002     48.1     26     43
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0009629; P:response to gravity; ISS:UniProtKB.
187Q4PC17    858   MRD1_USTMA Multiple RNA-binding domain-contai...710.42     37.7     28     52GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
188Q5RF83    172   CIRBP_PONAB Cold-inducible RNA-binding protei...840.0002     45.8     26     54GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0070181; F:SSU rRNA binding; ISS:UniProtKB.::GO:0030371; F:translation repressor activity; ISS:UniProtKB.
GO:0048255; P:mRNA stabilization; ISS:UniProtKB.::GO:0045727; P:positive regulation of translation; ISS:UniProtKB.::GO:0006950; P:response to stress; IEA:UniProtKB-KW.::GO:0009411; P:response to UV; ISS:UniProtKB.::GO:0034063; P:stress granule assembly; ISS:UniProtKB.
189Q14011    172   CIRBP_HUMAN Cold-inducible RNA-binding protei...840.0002     45.8     26     54GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0003730; F:mRNA 3'-UTR binding; IDA:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0070181; F:SSU rRNA binding; IDA:UniProtKB.::GO:0030371; F:translation repressor activity; ISS:UniProtKB.
GO:0048255; P:mRNA stabilization; IDA:UniProtKB.::GO:0045727; P:positive regulation of translation; IDA:UniProtKB.::GO:0009409; P:response to cold; TAS:ProtInc.::GO:0009411; P:response to UV; IDA:UniProtKB.::GO:0034063; P:stress granule assembly; ISS:UniProtKB.
190Q76LC6    230   RBM24_DANRE RNA-binding protein 24 OS=Danio r...610.0002     46.6     38     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0003228; P:atrial cardiac muscle tissue development; IMP:ZFIN.::GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0001947; P:heart looping; IMP:ZFIN.::GO:0043488; P:regulation of mRNA stability; ISS:UniProtKB.::GO:0010830; P:regulation of myotube differentiation; ISS:UniProtKB.
191Q04836    329   ROC3_ARATH 31 kDa ribonucleoprotein, chloropl...2400.0003     47.4     23     42GO:0009941; C:chloroplast envelope; IDA:TAIR.::GO:0009570; C:chloroplast stroma; IDA:TAIR.::GO:0009535; C:chloroplast thylakoid membrane; IDA:TAIR.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008266; F:poly(U) RNA binding; IDA:TAIR.
GO:0045087; P:innate immune response; IDA:TAIR.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0009451; P:RNA modification; IMP:TAIR.
192Q9VVE5    369   MSIR6_DROME RNA-binding protein Musashi homol...1480.064     39.7     26     43GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005844; C:polysome; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008266; F:poly(U) RNA binding; ISS:UniProtKB.
GO:0048864; P:stem cell development; ISS:UniProtKB.
193Q24668    354   SXL_DROSU Protein sex-lethal OS=Drosophila su...1150.006     43.1     30     46
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0007548; P:sex differentiation; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
194Q8VC70    383   RBMS2_MOUSE RNA-binding motif, single-strande...1580.0003     47.4     25     44GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
195O97018    307   SXL_CHRRU Sex-lethal homolog OS=Chrysomya ruf...970.14     38.5     31     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
196P49314    292   ROC2_NICPL 31 kDa ribonucleoprotein, chloropl...753.2     34.3     23     49GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
197P0CR16    769   MRD1_CRYNJ Multiple RNA-binding domain-contai...1872     35.4     20     35GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
198P0CR17    769   MRD1_CRYNB Multiple RNA-binding domain-contai...1872     35.4     20     35GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
199Q15434    407   RBMS2_HUMAN RNA-binding motif, single-strande...1580.0004     47     25     44GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; TAS:ProtInc.
GO:0006396; P:RNA processing; TAS:ProtInc.
200P28644    233   ROC1_SPIOL 28 kDa ribonucleoprotein, chloropl...1380.91     35.8     24     39GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
201Q7T3I7    214   RBM38_XENLA RNA-binding protein 38 OS=Xenopus...700.0005     45.4     34     51GO:0005829; C:cytosol; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
202Q00916    300   RU17_YEAST U1 small nuclear ribonucleoprotein...840.0005     46.2     32     54GO:0000243; C:commitment complex; IPI:SGD.::GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.
GO:0003729; F:mRNA binding; IPI:SGD.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0030619; F:U1 snRNA binding; IPI:SGD.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.
203Q9NZI8    577   IF2B1_HUMAN Insulin-like growth factor 2 mRNA...1760.0005     46.6     25     45GO:0070937; C:CRD-mediated mRNA stability complex; IDA:UniProtKB.::GO:0010494; C:cytoplasmic stress granule; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0043197; C:dendritic spine; IEA:UniProtKB-SubCell.::GO:0030027; C:lamellipodium; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IDA:HPA.::GO:0005886; C:plasma membrane; IDA:HPA.
GO:0003730; F:mRNA 3'-UTR binding; IDA:UniProtKB.::GO:0048027; F:mRNA 5'-UTR binding; IDA:BHF-UCL.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0045182; F:translation regulator activity; IDA:BHF-UCL.
GO:0070934; P:CRD-mediated mRNA stabilization; IDA:UniProtKB.::GO:0017148; P:negative regulation of translation; IDA:BHF-UCL.::GO:0042035; P:regulation of cytokine biosynthetic process; IC:BHF-UCL.::GO:0010610; P:regulation of mRNA stability involved in response to stress; IMP:UniProtKB.
204Q09511    196   RSP4_CAEEL Probable splicing factor, arginine...730.0005     45.1     32     55GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; NAS:UniProtKB.
GO:0010171; P:body morphogenesis; IMP:WormBase.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0001703; P:gastrulation with mouth forming first; IMP:WormBase.::GO:0040011; P:locomotion; IMP:WormBase.::GO:0002009; P:morphogenesis of an epithelium; IMP:WormBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; NAS:UniProtKB.::GO:0040010; P:positive regulation of growth rate; IMP:WormBase.::GO:0042127; P:regulation of cell proliferation; IMP:WormBase.::GO:0040020; P:regulation of meiosis; IMP:WormBase.
205O61374    348   SXL_CERCA Sex-lethal homolog OS=Ceratitis cap...970.006     42.7     33     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
206Q8CGX0    577   IF2B1_RAT Insulin-like growth factor 2 mRNA-b...1760.0006     46.6     25     45GO:0070937; C:CRD-mediated mRNA stability complex; ISS:UniProtKB.::GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.::GO:0043197; C:dendritic spine; IEA:UniProtKB-SubCell.::GO:0030027; C:lamellipodium; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0010610; P:regulation of mRNA stability involved in response to stress; ISS:UniProtKB.::GO:0006403; P:RNA localization; IMP:RGD.
207Q3ZBP3    403   RBMS1_BOVIN RNA-binding motif, single-strande...1570.0006     46.2     25     42GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
208P19339    354   SXL_DROME Protein sex-lethal OS=Drosophila me...1210.002     44.3     31     45GO:0043234; C:protein complex; IPI:FlyBase.
GO:0008083; F:growth factor activity; IDA:FlyBase.::GO:0003730; F:mRNA 3'-UTR binding; IDA:FlyBase.::GO:0048027; F:mRNA 5'-UTR binding; IDA:FlyBase.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008266; F:poly(U) RNA binding; IDA:FlyBase.::GO:0000900; F:translation repressor activity, nucleic acid binding; TAS:FlyBase.
GO:0000380; P:alternative nuclear mRNA splicing, via spliceosome; TAS:FlyBase.::GO:0007549; P:dosage compensation; NAS:FlyBase.::GO:0019099; P:female germ-line sex determination; TAS:FlyBase.::GO:0019101; P:female somatic sex determination; TAS:FlyBase.::GO:0007281; P:germ cell development; TAS:FlyBase.::GO:0007446; P:imaginal disc growth; IMP:FlyBase.::GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; TAS:FlyBase.::GO:0009994; P:oocyte differentiation; IDA:FlyBase.::GO:0007131; P:reciprocal meiotic recombination; TAS:FlyBase.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0007541; P:sex determination, primary response to X:A ratio; TAS:FlyBase.::GO:0007548; P:sex differentiation; NAS:FlyBase.::GO:0007224; P:smoothened signaling pathway; IDA:FlyBase.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
209Q6DIV4    219   RBM38_XENTR RNA-binding protein 38 OS=Xenopus...700.0007     45.1     34     51GO:0005829; C:cytosol; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
210O88477    577   IF2B1_MOUSE Insulin-like growth factor 2 mRNA...1760.0007     46.6     25     45GO:0070937; C:CRD-mediated mRNA stability complex; ISS:UniProtKB.::GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0010610; P:regulation of mRNA stability involved in response to stress; ISS:UniProtKB.
211P29558    406   RBMS1_HUMAN RNA-binding motif, single-strande...1570.0007     46.2     25     42GO:0005634; C:nucleus; NAS:UniProtKB.
GO:0003690; F:double-stranded DNA binding; NAS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; NAS:UniProtKB.::GO:0003697; F:single-stranded DNA binding; NAS:UniProtKB.
GO:0006260; P:DNA replication; NAS:UniProtKB.::GO:0006396; P:RNA processing; TAS:ProtInc.
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