Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YHL034C
Length:
294
Number of sequences:
5887
Description:
YHL034C SBP1 SGDID:S000001026, Chr VIII from 34077-33193, Genome Release 64-1-1, reverse complement, Verified ORF, "Putative RNA binding protein; involved in translational repression and found in cytoplasmic P bodies; found associated with small nucleolar RNAs snR10 and snR11"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
61Q08935    273   ROC1_NICSY 29 kDa ribonucleoprotein A, chloro...830.44     35.4     30     52GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
62Q2GSX8    783   PABP_CHAGB Polyadenylate-binding protein, cyt...1040.51     35.8     29     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
63P27476    414   NSR1_YEAST Nuclear localization sequence-bind...971     34.7     26     47GO:0005739; C:mitochondrion; IDA:SGD.::GO:0005730; C:nucleolus; TAS:SGD.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IDA:SGD.::GO:0003697; F:single-stranded DNA binding; IDA:SGD.
GO:0006950; P:response to stress; IEA:UniProtKB-KW.::GO:0000028; P:ribosomal small subunit assembly; TAS:SGD.::GO:0006364; P:rRNA processing; TAS:SGD.
64Q44556    94   RBPD_NOSS1 Putative RNA-binding protein rbpD ...960.72     32.7     28     49
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
65O94260    434   G3BP_SCHPO Putative G3BP-like protein OS=Schi...1410.72     35     24     42GO:0005829; C:cytosol; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:PomBase.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0016579; P:protein deubiquitination; ISS:PomBase.::GO:0060628; P:regulation of ER to Golgi vesicle-mediated transport; ISS:PomBase.
66C0H859    155   NCBP2_SALSA Nuclear cap-binding protein subun...800.8     33.9     29     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0031047; P:gene silencing by RNA; IEA:UniProtKB-KW.::GO:0006370; P:mRNA capping; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0046833; P:positive regulation of RNA export from nucleus; ISS:UniProtKB.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; ISS:UniProtKB.::GO:0006408; P:snRNA export from nucleus; ISS:UniProtKB.
67O74400    674   YOCE_SCHPO Uncharacterized RNA-binding protei...930.8     35     30     47GO:0005730; C:nucleolus; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; ISS:PomBase.
68Q871A4    494   PPIL4_NEUCR Peptidyl-prolyl cis-trans isomera...900.82     35     23     53GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003755; F:peptidyl-prolyl cis-trans isomerase activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006457; P:protein folding; IEA:UniProtKB-KW.
69C1BY64    155   NCBP2_ESOLU Nuclear cap-binding protein subun...800.82     33.9     29     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0031047; P:gene silencing by RNA; IEA:UniProtKB-KW.::GO:0006370; P:mRNA capping; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0046833; P:positive regulation of RNA export from nucleus; ISS:UniProtKB.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; ISS:UniProtKB.::GO:0006408; P:snRNA export from nucleus; ISS:UniProtKB.
70O13620    833   MRD1_SCHPO Multiple RNA-binding domain-contai...390.86     35     41     59GO:0030686; C:90S preribosome; ISS:PomBase.::GO:0005730; C:nucleolus; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:PomBase.
GO:0006364; P:rRNA processing; ISS:PomBase.::GO:0034462; P:small-subunit processome assembly; ISS:PomBase.
71B0W939    160   NCBP2_CULQU Nuclear cap-binding protein subun...1050.96     33.9     26     40GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0031047; P:gene silencing by RNA; IEA:UniProtKB-KW.::GO:0006370; P:mRNA capping; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
72A6NDY0    278   EPAB2_HUMAN Embryonic polyadenylate-binding p...1291     34.3     29     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
73Q5M9G3    707   CAPR1_RAT Caprin-1 OS=Rattus norvegicus (Rat)...471.1     34.7     43     45GO:0000932; C:cytoplasmic mRNA processing body; IDA:UniProtKB.::GO:0010494; C:cytoplasmic stress granule; IDA:UniProtKB.::GO:0005829; C:cytosol; IEA:UniProtKB-SubCell.::GO:0030425; C:dendrite; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IDA:UniProtKB.
GO:0017148; P:negative regulation of translation; IDA:UniProtKB.::GO:0050775; P:positive regulation of dendrite morphogenesis; ISS:UniProtKB.::GO:0061003; P:positive regulation of dendritic spine morphogenesis; ISS:UniProtKB.
74P26368    475   U2AF2_HUMAN Splicing factor U2AF 65 kDa subun...901.1     34.7     27     40GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005681; C:spliceosomal complex; IDA:HGNC.
GO:0019899; F:enzyme binding; IPI:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0031124; P:mRNA 3'-end processing; TAS:Reactome.::GO:0006406; P:mRNA export from nucleus; TAS:Reactome.::GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; IDA:UniProtKB.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:HGNC.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
75Q44560    102   RBPA_NOSS1 Putative RNA-binding protein rbpA ...381.1     32.3     34     63
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
76B2UAA3    964   IF2_RALPJ Translation initiation factor IF-2 ...421.1     34.7     43     60GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005525; F:GTP binding; IEA:UniProtKB-KW.::GO:0003924; F:GTPase activity; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
77Q91372    700   DDX4_XENLA Probable ATP-dependent RNA helicas...581.7     33.9     45     48GO:0005635; C:nuclear envelope; IDA:UniProtKB.::GO:0071546; C:pi-body; ISS:UniProtKB.::GO:0071547; C:piP-body; ISS:UniProtKB.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0007281; P:germ cell development; IMP:UniProtKB.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0048477; P:oogenesis; IEA:UniProtKB-KW.::GO:0007283; P:spermatogenesis; IEA:UniProtKB-KW.
78P26369    475   U2AF2_MOUSE Splicing factor U2AF 65 kDa subun...901.1     34.3     27     40GO:0016607; C:nuclear speck; TAS:UniProtKB.
GO:0070742; F:C2H2 zinc finger domain binding; IPI:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IDA:UniProtKB.
79P59708    125   PM14_MOUSE Pre-mRNA branch site protein p14 O...821.1     33.1     29     46
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
80Q9Y3B4    125   PM14_HUMAN Pre-mRNA branch site protein p14 O...821.1     33.1     29     46GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005689; C:U12-type spliceosomal complex; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.
81Q56JZ7    217   ZCRB1_BOVIN Zinc finger CCHC-type and RNA-bin...831.3     33.9     25     48GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
82Q3B8Q1    782   DDX21_RAT Nucleolar RNA helicase 2 OS=Rattus ...431.3     34.3     51     60GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
83Q09511    196   RSP4_CAEEL Probable splicing factor, arginine...811.4     33.5     26     54GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; NAS:UniProtKB.
GO:0010171; P:body morphogenesis; IMP:WormBase.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0001703; P:gastrulation with mouth forming first; IMP:WormBase.::GO:0040011; P:locomotion; IMP:WormBase.::GO:0002009; P:morphogenesis of an epithelium; IMP:WormBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; NAS:UniProtKB.::GO:0040010; P:positive regulation of growth rate; IMP:WormBase.::GO:0042127; P:regulation of cell proliferation; IMP:WormBase.::GO:0040020; P:regulation of meiosis; IMP:WormBase.
84Q5M9F1    428   RBM34_RAT RNA-binding protein 34 OS=Rattus no...2861.5     33.9     22     39GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
85Q8JGR6    155   NCBP2_DANRE Nuclear cap-binding protein subun...801.5     33.1     29     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0031047; P:gene silencing by RNA; IEA:UniProtKB-KW.::GO:0006370; P:mRNA capping; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0046833; P:positive regulation of RNA export from nucleus; ISS:UniProtKB.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; ISS:UniProtKB.::GO:0006408; P:snRNA export from nucleus; ISS:UniProtKB.
86Q4PC17    858   MRD1_USTMA Multiple RNA-binding domain-contai...591.7     33.9     32     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
87Q9WX39    105   RBPF_NOSS1 Putative RNA-binding protein rbpF ...384.2     30.8     32     63
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
88Q44554    103   RBPB_NOSS1 Putative RNA-binding protein rbpB ...381.8     32     32     66
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
89Q9XFD1    257   NCBP2_ARATH Nuclear cap-binding protein subun...1031.8     33.5     27     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005845; C:mRNA cap binding complex; TAS:TAIR.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0000339; F:RNA cap binding; IDA:TAIR.
GO:0006370; P:mRNA capping; IEA:UniProtKB-KW.::GO:0031053; P:primary miRNA processing; IMP:TAIR.::GO:0000394; P:RNA splicing, via endonucleolytic cleavage and ligation; IMP:TAIR.
90Q177H0    159   NCBP2_AEDAE Nuclear cap-binding protein subun...802     32.7     28     45GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0031047; P:gene silencing by RNA; IEA:UniProtKB-KW.::GO:0006370; P:mRNA capping; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
91B1WC40    156   NCBP2_RAT Nuclear cap-binding protein subunit...542     32.7     28     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0031047; P:gene silencing by RNA; IEA:UniProtKB-KW.::GO:0006370; P:mRNA capping; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0046833; P:positive regulation of RNA export from nucleus; ISS:UniProtKB.::GO:0008380; P:RNA splicing; ISS:UniProtKB.::GO:0006408; P:snRNA export from nucleus; ISS:UniProtKB.
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