Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YGR258C
Length:
1031
Number of sequences:
5887
Description:
YGR258C RAD2 SGDID:S000003490, Chr VII from 1010766-1007671, Genome Release 64-1-1, reverse complement, Verified ORF, "Single-stranded DNA endonuclease, cleaves single-stranded DNA during nucleotide excision repair to excise damaged DNA; subunit of Nucleotide Excision Repair Factor 3 (NEF3); homolog of human XPG protein"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
211Q5V5T7    326   FEN_HALMA Flap endonuclease 1 OS=B-1809) (Hal...990.0009     46.2     31     51
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
212Q9QZ11    837   EXO1_MOUSE Exonuclease 1 OS=Mus musculus (Mou...790.017     42.7     23     46GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0048256; F:flap endonuclease activity; ISS:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0045145; F:single-stranded DNA specific 5'-3' exodeoxyribonuclease activity; ISS:UniProtKB.::GO:0043566; F:structure-specific DNA binding; IDA:MGI.
GO:0002455; P:humoral immune response mediated by circulating immunoglobulin; IMP:MGI.::GO:0045190; P:isotype switching; IMP:MGI.::GO:0007126; P:meiosis; IEA:UniProtKB-KW.::GO:0006298; P:mismatch repair; ISS:UniProtKB.::GO:0016446; P:somatic hypermutation of immunoglobulin genes; IMP:MGI.
213Q9HQ27    327   FEN_HALSA Flap endonuclease 1 OS=(Halobacteri...740.07     40.4     32     51
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
214B0R5F5    327   FEN_HALS3 Flap endonuclease 1 OS=Halobacteriu...740.07     40.4     32     51
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
215Q9UQ84    846   EXO1_HUMAN Exonuclease 1 OS=Homo sapiens (Hum...790.03     42     24     43GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0051908; F:double-stranded DNA specific 5'-3' exodeoxyribonuclease activity; IDA:UniProtKB.::GO:0048256; F:flap endonuclease activity; IDA:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0004523; F:ribonuclease H activity; TAS:ProtInc.::GO:0045145; F:single-stranded DNA specific 5'-3' exodeoxyribonuclease activity; IDA:UniProtKB.
GO:0007126; P:meiosis; IEA:UniProtKB-KW.::GO:0006298; P:mismatch repair; IDA:UniProtKB.
216Q09708    496   YAGG_SCHPO Uncharacterized protein C12G12.16c...1200.000003     55.1     30     52GO:0005737; C:cytoplasm; IDA:PomBase.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:InterPro.
217Q9W6K2    734   EXO1_XENLA Exonuclease 1 OS=Xenopus laevis (A...1080.000008     53.5     25     45GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0048256; F:flap endonuclease activity; ISS:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0045145; F:single-stranded DNA specific 5'-3' exodeoxyribonuclease activity; ISS:UniProtKB.
GO:0006310; P:DNA recombination; ISS:UniProtKB.::GO:0006298; P:mismatch repair; ISS:UniProtKB.
218Q54ED2    1046   EXO1_DICDI Exonuclease 1 OS=Dictyostelium dis...1120.0005     47.8     26     48GO:0005634; C:nucleus; ISS:dictyBase.
GO:0008409; F:5'-3' exonuclease activity; ISS:dictyBase.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006310; P:DNA recombination; ISS:dictyBase.::GO:0006281; P:DNA repair; ISS:dictyBase.
219Q803U7    806   EXO1_DANRE Exonuclease 1 OS=Danio rerio (Zebr...1090.0002     49.3     26     49GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0048256; F:flap endonuclease activity; ISS:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0045145; F:single-stranded DNA specific 5'-3' exodeoxyribonuclease activity; ISS:UniProtKB.
GO:0006310; P:DNA recombination; ISS:UniProtKB.::GO:0006298; P:mismatch repair; ISS:UniProtKB.
220Q24558    732   EXO1_DROME Exonuclease 1 OS=Drosophila melano...1230.022     42.4     24     46GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0051908; F:double-stranded DNA specific 5'-3' exodeoxyribonuclease activity; ISS:UniProtKB.::GO:0048256; F:flap endonuclease activity; ISS:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0045145; F:single-stranded DNA specific 5'-3' exodeoxyribonuclease activity; ISS:UniProtKB.
GO:0006310; P:DNA recombination; ISS:UniProtKB.::GO:0006298; P:mismatch repair; ISS:UniProtKB.
221Q196Y4    380   VF369_IIV3 Probable RAD2-like endonuclease 07...800.44     37.7     30     50GO:0042025; C:host cell nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:InterPro.
222O08307    942   DPO1_CHLAA DNA polymerase I OS=Chloroflexus a...2010.14     40     24     43GO:0005622; C:intracellular; IEA:InterPro.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
223C0ZG86    925   SYI_BREBN Isoleucine--tRNA ligase OS=Brevibac...720.27     38.9     29     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004822; F:isoleucine-tRNA ligase activity; IEA:EC.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006428; P:isoleucyl-tRNA aminoacylation; IEA:InterPro.
224C3PG89    414   MSHC_CORA7 L-cysteine:1D-myo-inositol 2-amino...1150.32     38.5     30     46
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0035446; F:cysteine-glucosaminylinositol ligase activity; IEA:EC.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0010125; P:mycothiol biosynthetic process; IEA:InterPro.
225Q49406    291   EX53_MYCGE 5'-3' exonuclease OS=Mycoplasma ge...510.59     37.4     35     59
GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
226P57506    286   EX53_BUCAI 5'-3' exonuclease OS=(Acyrthosipho...1880.83     36.6     24     47
GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
227A1RLT6    262   XNI_SHESW Protein Xni OS=Shewanella sp. (stra...1860.87     36.6     24     42
GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:InterPro.
GO:0006281; P:DNA repair; IEA:InterPro.
228A4Y4Y4    262   XNI_SHEPC Protein Xni OS=Shewanella putrefaci...1860.94     36.6     24     42
GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:InterPro.
GO:0006281; P:DNA repair; IEA:InterPro.
229P84398    497   VHS_EHV1V Virion host shutoff protein OS=Equi...520.96     37     38     50GO:0019012; C:virion; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:InterPro.
230P28957    497   VHS_EHV1B Virion host shutoff protein OS=Equi...520.96     37     38     50GO:0019012; C:virion; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:InterPro.
231P75403    291   EX53_MYCPN 5'-3' exonuclease OS=Mycoplasma pn...472.3     35.4     36     60
GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
232P49649    888   SECA_ODOSI Protein translocase subunit SecA O...542.5     35.8     37     63GO:0009570; C:chloroplast stroma; IEA:UniProtKB-SubCell.::GO:0009535; C:chloroplast thylakoid membrane; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO:0017038; P:protein import; IEA:InterPro.::GO:0006605; P:protein targeting; IEA:InterPro.
233P52026    876   DPO1_GEOSE DNA polymerase I OS=Geobacillus st...573.1     35.4     28     65GO:0005622; C:intracellular; IEA:InterPro.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
234B0TPG7    252   XNI_SHEHH Protein Xni OS=Shewanella halifaxen...1844.2     34.3     24     42
GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:InterPro.
235A8FYJ2    255   XNI_SHESH Protein Xni OS=Shewanella sediminis...1454.2     34.3     23     43
GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:InterPro.
GO:0006281; P:DNA repair; IEA:InterPro.
236A5FJT9    350   FENR_FLAJ1 Ferredoxin--NADP reductase OS=(Cyt...924.5     34.7     30     50
GO:0004324; F:ferredoxin-NADP+ reductase activity; IEA:EC.::GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro.
237O32801    877   DPO1_LACLM DNA polymerase I OS=Lactococcus la...1295     34.7     27     50GO:0005622; C:intracellular; IEA:InterPro.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
238Q9CDS1    877   DPO1_LACLA DNA polymerase I OS=lactis). GN=po...1435.2     34.7     26     50GO:0005622; C:intracellular; IEA:InterPro.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
239A3LZW1    257   MED7_PICST Mediator of RNA polymerase II tran...1448.9     33.5     27     45GO:0016592; C:mediator complex; IEA:InterPro.
GO:0001104; F:RNA polymerase II transcription cofactor activity; IEA:InterPro.
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