Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YGR156W
Length:
425
Number of sequences:
5887
Description:
YGR156W PTI1 SGDID:S000003388, Chr VII from 800546-801823, Genome Release 64-1-1, Verified ORF, "Essential protein that is a component of CPF (cleavage and polyadenylation factor); involved in 3' end formation of snoRNA and mRNA; interacts directly with Pta1p; has similarity to mammalian Cleavage-Stimulation Factor CstF-64"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P39927    425   PTI1_YEAST Protein PTI1 OS=Saccharomyces cere...4250     849     100     100GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; IDA:SGD.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0006379; P:mRNA cleavage; IMP:SGD.::GO:0006378; P:mRNA polyadenylation; IMP:SGD.::GO:0031126; P:snoRNA 3'-end processing; IMP:SGD.::GO:0030847; P:termination of RNA polymerase II transcription, exosome-dependent; IMP:SGD.::GO:0030846; P:termination of RNA polymerase II transcription, poly(A)-coupled; IPI:SGD.
2Q9P6P7    422   YKCG_SCHPO Uncharacterized RNA-binding protei...2540.011     41.6     22     42GO:0005849; C:mRNA cleavage factor complex; ISS:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:PomBase.
GO:0006379; P:mRNA cleavage; ISS:PomBase.::GO:0006378; P:mRNA polyadenylation; ISS:PomBase.
3Q8HXM1    572   CSTF2_BOVIN Cleavage stimulation factor subun...980.049     39.7     29     52GO:0071920; C:cleavage body; ISS:UniProtKB.::GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
4A8WLV5    261   EIF3G_CAEBR Probable eukaryotic translation i...950.05     38.9     34     45
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
5Q8BIQ5    580   CSTF2_MOUSE Cleavage stimulation factor subun...870.053     39.7     29     53GO:0071920; C:cleavage body; ISS:UniProtKB.::GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
6P33240    577   CSTF2_HUMAN Cleavage stimulation factor subun...870.093     38.9     28     53GO:0071920; C:cleavage body; IDA:UniProtKB.::GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; TAS:ProtInc.
GO:0006379; P:mRNA cleavage; TAS:ProtInc.::GO:0006378; P:mRNA polyadenylation; TAS:ProtInc.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
7Q5RDA3    577   CSTF2_PONAB Cleavage stimulation factor subun...870.095     38.5     28     53GO:0071920; C:cleavage body; ISS:UniProtKB.::GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
8D1FP53    1488   LIN_MEDTR Putative E3 ubiquitin-protein ligas...1120.27     37.4     29     47GO:0000151; C:ubiquitin ligase complex; IEA:InterPro.
GO:0005488; F:binding; IEA:InterPro.::GO:0004842; F:ubiquitin-protein ligase activity; IEA:InterPro.
GO:0009877; P:nodulation; IEA:UniProtKB-KW.
9Q19706    256   EIF3G_CAEEL Eukaryotic translation initiation...920.32     36.6     33     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0010171; P:body morphogenesis; IMP:WormBase.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0040007; P:growth; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0040010; P:positive regulation of growth rate; IMP:WormBase.::GO:0000003; P:reproduction; IMP:WormBase.
10Q9VDW6    3598   DMDA_DROME Dystrophin, isoforms A/C/F/G/H OS=...1510.91     35.8     23     44GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005856; C:cytoskeleton; IDA:UniProtKB.::GO:0016010; C:dystrophin-associated glycoprotein complex; IPI:FlyBase.::GO:0042383; C:sarcolemma; IEA:UniProtKB-SubCell.::GO:0045202; C:synapse; IDA:UniProtKB.
GO:0003779; F:actin binding; IEA:UniProtKB-KW.::GO:0050699; F:WW domain binding; IPI:FlyBase.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0030010; P:establishment of cell polarity; IMP:FlyBase.::GO:0008586; P:imaginal disc-derived wing vein morphogenesis; IMP:FlyBase.::GO:0007474; P:imaginal disc-derived wing vein specification; IMP:UniProtKB.::GO:0046716; P:muscle cell homeostasis; IMP:FlyBase.::GO:0007274; P:neuromuscular synaptic transmission; IDA:FlyBase.::GO:0046928; P:regulation of neurotransmitter secretion; IMP:UniProtKB.::GO:0048172; P:regulation of short-term neuronal synaptic plasticity; IDA:FlyBase.
11Q8C7E9    632   CSTFT_MOUSE Cleavage stimulation factor subun...771     35.4     25     53GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IDA:MGI.
GO:0006378; P:mRNA polyadenylation; TAS:MGI.
12Q9H0L4    616   CSTFT_HUMAN Cleavage stimulation factor subun...771.2     35     25     53GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
13O43040    363   CTF1_SCHPO Cleavage and termination factor 1 ...753.2     33.5     31     44GO:0005829; C:cytosol; IDA:PomBase.::GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006378; P:mRNA polyadenylation; IC:PomBase.
14Q15717    326   ELAV1_HUMAN ELAV-like protein 1 OS=Homo sapie...794.8     33.1     30     48GO:0005829; C:cytosol; TAS:Reactome.::GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0017091; F:AU-rich element binding; IDA:UniProtKB.::GO:0003729; F:mRNA binding; TAS:ProtInc.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0019901; F:protein kinase binding; IPI:UniProtKB.
GO:0070935; P:3'-UTR-mediated mRNA stabilization; IDA:UniProtKB.::GO:0010467; P:gene expression; TAS:Reactome.::GO:0016071; P:mRNA metabolic process; TAS:Reactome.::GO:0007275; P:multicellular organismal development; TAS:ProtInc.::GO:0045727; P:positive regulation of translation; IDA:MGI.
15P41891    500   GAR2_SCHPO Protein gar2 OS=Schizosaccharomyce...625.8     33.1     29     52GO:0005730; C:nucleolus; IDA:PomBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; TAS:PomBase.
GO:0007000; P:nucleolus organization; IMP:PomBase.::GO:0006364; P:rRNA processing; IMP:PomBase.
16O28611    89   Y1662_ARCFU Uncharacterized protein AF_1662 O...567     30.4     27     55
17P25299    296   RNA15_YEAST mRNA 3'-end-processing protein RN...478.9     32     30     57GO:0005849; C:mRNA cleavage factor complex; IPI:SGD.
GO:0003729; F:mRNA binding; IDA:SGD.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0046982; F:protein heterodimerization activity; IPI:SGD.
GO:0006379; P:mRNA cleavage; IDA:SGD.::GO:0006378; P:mRNA polyadenylation; IDA:SGD.
records
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