Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
Home About FGC Use Cases Species List

UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YGR072W
Length:
387
Number of sequences:
5887
Description:
YGR072W UPF3 SGDID:S000003304, Chr VII from 634304-635467, Genome Release 64-1-1, Verified ORF, "Component of the nonsense-mediated mRNA decay (NMD) pathway, along with Nam7p and Nmd2p; involved in decay of mRNA containing nonsense codons; involved in telomere maintenance"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P48412    387   UPF3_YEAST Nonsense-mediated mRNA decay prote...3870     778     100     100GO:0005737; C:cytoplasm; IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0005844; C:polysome; IDA:SGD.
GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0070478; P:nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay; IGI:SGD.::GO:0016567; P:protein ubiquitination; IMP:SGD.
2B0S733    452   REN3A_DANRE Regulator of nonsense transcripts...1290.061     38.9     28     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.
3Q9BZI7    483   REN3B_HUMAN Regulator of nonsense transcripts...1370.062     38.9     26     43GO:0005829; C:cytosol; TAS:Reactome.::GO:0035145; C:exon-exon junction complex; IDA:UniProtKB.::GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0003729; F:mRNA binding; IDA:UniProtKB.::GO:0005487; F:nucleocytoplasmic transporter activity; NAS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0031124; P:mRNA 3'-end processing; TAS:Reactome.::GO:0006406; P:mRNA export from nucleus; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IDA:UniProtKB.::GO:0045727; P:positive regulation of translation; IDA:UniProtKB.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
4Q9H1J1    476   REN3A_HUMAN Regulator of nonsense transcripts...1740.17     37.7     26     42GO:0005829; C:cytosol; TAS:Reactome.::GO:0005634; C:nucleus; NAS:UniProtKB.::GO:0005886; C:plasma membrane; IDA:HPA.
GO:0005487; F:nucleocytoplasmic transporter activity; NAS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0010467; P:gene expression; TAS:Reactome.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; NAS:UniProtKB.::GO:0045727; P:positive regulation of translation; IDA:UniProtKB.
5Q91Z69    1062   SRGP1_MOUSE SLIT-ROBO Rho GTPase-activating p...1641.1     35.4     25     49GO:0005622; C:intracellular; IEA:InterPro.
GO:0005100; F:Rho GTPase activator activity; IDA:MGI.::GO:0017048; F:Rho GTPase binding; IDA:MGI.
GO:0016477; P:cell migration; IDA:MGI.::GO:0007266; P:Rho protein signal transduction; IDA:MGI.
6Q7Z6B7    1085   SRGP1_HUMAN SLIT-ROBO Rho GTPase-activating p...1642.2     34.3     24     49GO:0005829; C:cytosol; TAS:Reactome.
GO:0007411; P:axon guidance; TAS:Reactome.
7Q10267    278   YD33_SCHPO Uncharacterized protein C13G7.03 O...1437.2     32     22     41GO:0005737; C:cytoplasm; ISS:PomBase.::GO:0005730; C:nucleolus; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; ISS:PomBase.
8Q5UPK9    883   YL138_MIMIV Uncharacterized protein L138 OS=A...788.8     32.3     29     49
9Q048U4    169   RL10_LACDB 50S ribosomal protein L10 OS=Lacto...689.2     31.2     34     43GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0042254; P:ribosome biogenesis; IEA:InterPro.::GO:0006412; P:translation; IEA:InterPro.
10Q1G904    169   RL10_LACDA 50S ribosomal protein L10 OS=20081...689.2     31.2     34     43GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0042254; P:ribosome biogenesis; IEA:InterPro.::GO:0006412; P:translation; IEA:InterPro.
11Q2T9Z6    724   CN038_BOVIN Uncharacterized protein C14orf38 ...9010     32     34     51
records
Previous ‹‹ ›› Next Total records: 11 1 - 11
Elimate unknown annotation:
Filter for keyword on hit description:
Select upper E value:
Select lower bit score:
Select lower %idenity value:
Select lower %positive value:
Taxonomic division:
Lower limit on hit length:
Lower limit on alignment length::