Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YGR048W
Length:
361
Number of sequences:
5887
Description:
YGR048W UFD1 SGDID:S000003280, Chr VII from 589826-590911, Genome Release 64-1-1, Verified ORF, "Protein that interacts with Cdc48p and Npl4p, involved in recognition of polyubiquitinated proteins and their presentation to the 26S proteasome for degradation; involved in transporting proteins from the ER to the cytosol"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P53044    361   UFD1_YEAST Ubiquitin fusion degradation prote...3610     733     100     100GO:0034098; C:Cdc48p-Npl4p-Ufd1p AAA ATPase complex; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0071629; P:cytoplasm-associated proteasomal ubiquitin-dependent protein catabolic process; IMP:SGD.::GO:0030433; P:ER-associated protein catabolic process; IMP:SGD.
2O42915    342   UFD1_SCHPO Ubiquitin fusion degradation prote...3461e-84     267     44     60GO:0034098; C:Cdc48p-Npl4p-Ufd1p AAA ATPase complex; ISS:PomBase.::GO:0005829; C:cytosol; IDA:PomBase.::GO:0005634; C:nucleus; IDA:PomBase.
GO:0033554; P:cellular response to stress; IEP:PomBase.::GO:0030433; P:ER-associated protein catabolic process; ISS:PomBase.
3Q9ES53    307   UFD1_RAT Ubiquitin fusion degradation protein...3322e-62     208     39     56GO:0005829; C:cytosol; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005102; F:receptor binding; IPI:RGD.
GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
4Q92890    307   UFD1_HUMAN Ubiquitin fusion degradation prote...3327e-62     206     39     57GO:0005829; C:cytosol; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0004843; F:ubiquitin-specific protease activity; TAS:ProtInc.
GO:0001501; P:skeletal system development; TAS:ProtInc.::GO:0006511; P:ubiquitin-dependent protein catabolic process; TAS:ProtInc.
5P70362    307   UFD1_MOUSE Ubiquitin fusion degradation prote...3328e-62     206     39     56GO:0005829; C:cytosol; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
6Q9VTF9    316   UFD1_DROME Ubiquitin fusion degradation prote...3395e-60     202     37     54GO:0000502; C:proteasome complex; NAS:FlyBase.
GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
7Q55BK0    330   UFD1_DICDI Ubiquitin fusion degradation prote...1835e-52     181     48     69
GO:0006511; P:ubiquitin-dependent protein catabolic process; ISS:dictyBase.
8Q19584    342   UFD1_CAEEL Ubiquitin fusion degradation prote...2549e-47     168     40     56GO:0034098; C:Cdc48p-Npl4p-Ufd1p AAA ATPase complex; IPI:WormBase.::GO:0005634; C:nucleus; IDA:WormBase.
GO:0008340; P:determination of adult lifespan; IMP:WormBase.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0071712; P:ER-associated misfolded protein catabolic process; IMP:WormBase.::GO:0040007; P:growth; IMP:WormBase.::GO:0040011; P:locomotion; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0040010; P:positive regulation of growth rate; IMP:WormBase.
9O07779    78   VPB27_MYCTU Antitoxin VapB27 OS=Mycobacterium...450.35     33.9     36     62
10Q78IQ7    660   S39A4_MOUSE Zinc transporter ZIP4 OS=Mus musc...581.5     34.7     31     57GO:0016324; C:apical plasma membrane; IDA:MGI.::GO:0016023; C:cytoplasmic membrane-bounded vesicle; IDA:MGI.::GO:0005768; C:endosome; IDA:MGI.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.::GO:0055038; C:recycling endosome membrane; IEA:UniProtKB-SubCell.
GO:0046873; F:metal ion transmembrane transporter activity; IEA:InterPro.::GO:0005385; F:zinc ion transmembrane transporter activity; IDA:MGI.
GO:0034224; P:cellular response to zinc ion starvation; IDA:MGI.::GO:0006882; P:cellular zinc ion homeostasis; IDA:MGI.::GO:0006829; P:zinc ion transport; IEA:UniProtKB-KW.
11B6YST0    291   Y132_THEON MEMO1 family protein TON_0132 OS=T...1003.9     32.7     23     43
GO:0008198; F:ferrous iron binding; IEA:InterPro.::GO:0016491; F:oxidoreductase activity; IEA:InterPro.
GO:0006725; P:cellular aromatic compound metabolic process; IEA:InterPro.
12O51745    716   PNP_BORBU Polyribonucleotide nucleotidyltrans...884.1     33.1     36     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
13B7J0Q1    722   PNP_BORBZ Polyribonucleotide nucleotidyltrans...884.3     33.1     36     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
14A0JPN2    656   S39A4_RAT Zinc transporter ZIP4 OS=Rattus nor...614.6     33.1     30     54GO:0016023; C:cytoplasmic membrane-bounded vesicle; ISS:UniProtKB.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0055038; C:recycling endosome membrane; IEA:UniProtKB-SubCell.
15Q8VYA3    769   WAKLJ_ARATH Wall-associated receptor kinase-l...595.1     32.7     31     58GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0005509; F:calcium ion binding; IEA:InterPro.::GO:0004383; F:guanylate cyclase activity; IDA:TAIR.::GO:0030247; F:polysaccharide binding; IEA:InterPro.::GO:0004674; F:protein serine/threonine kinase activity; IEA:UniProtKB-KW.
GO:0006952; P:defense response; IEP:TAIR.::GO:0009617; P:response to bacterium; IEP:TAIR.::GO:0009620; P:response to fungus; IEP:TAIR.::GO:0009751; P:response to salicylic acid stimulus; IEP:TAIR.
16A9KIP3    160   GREA_CLOPH Transcription elongation factor Gr...225.1     32     59     77
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0032784; P:regulation of transcription elongation, DNA-dependent; IEA:InterPro.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
17Q8NMB2    366   DISA_CORGL DNA integrity scanning protein Dis...846.6     32.3     25     46
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
18Q9C9L5    792   WAKLH_ARATH Wall-associated receptor kinase-l...597     32.3     31     58GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0005509; F:calcium ion binding; IEA:InterPro.::GO:0030247; F:polysaccharide binding; IEA:InterPro.::GO:0004674; F:protein serine/threonine kinase activity; IEA:UniProtKB-KW.
19A6UUY8    322   RNZ_META3 Ribonuclease Z OS=Methanococcus aeo...667.5     32     26     58
GO:0016891; F:endoribonuclease activity, producing 5'-phosphomonoesters; IEA:InterPro.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0042779; P:tRNA 3'-trailer cleavage; IEA:InterPro.
records
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