Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YGR013W
Length:
620
Number of sequences:
5887
Description:
YGR013W SNU71 SGDID:S000003245, Chr VII from 514554-516416, Genome Release 64-1-1, Verified ORF, "Component of U1 snRNP required for mRNA splicing via spliceosome; yeast specific, no metazoan counterpart"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P53207    620   SNU71_YEAST U1 small nuclear ribonucleoprotei...6200     1265     100     100GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IDA:SGD.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.
2A6ZV04    620   SNU71_YEAS7 U1 small nuclear ribonucleoprotei...6200     1262     99     99GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
3Q750D5    586   SNU71_ASHGO U1 small nuclear ribonucleoprotei...6319e-95     309     35     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
4A7TK94    636   SNU71_VANPO U1 small nuclear ribonucleoprotei...6581e-87     291     35     55GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
5Q6CST6    568   SNU71_KLULA U1 small nuclear ribonucleoprotei...6287e-85     282     33     52GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
6Q6FTU2    613   SNU71_CANGA U1 small nuclear ribonucleoprotei...6531e-44     172     29     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
7Q5AM84    614   SNU71_CANAL U1 small nuclear ribonucleoprotei...5484e-16     85.5     24     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
8Q6BXC3    609   SNU71_DEBHA U1 small nuclear ribonucleoprotei...550.005     43.5     36     64GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
9A3LRM6    579   SNU71_PICST U1 small nuclear ribonucleoprotei...540.094     39.3     39     61GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
10Q2UHC1    929   DBP10_ASPOR ATP-dependent RNA helicase dbp10 ...831.2     35.8     33     53GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
11P49756    843   RBM25_HUMAN RNA-binding protein 25 OS=Homo sa...541.5     35.8     22     59GO:0005737; C:cytoplasm; IDA:HPA.::GO:0016607; C:nuclear speck; IDA:UniProtKB.
GO:0003729; F:mRNA binding; IDA:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0006915; P:apoptotic process; IDA:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IDA:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
12B2RY56    841   RBM25_MOUSE RNA-binding protein 25 OS=Mus mus...541.7     35.4     22     59GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; ISS:UniProtKB.
GO:0003729; F:mRNA binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0006915; P:apoptotic process; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
13O95359    2948   TACC2_HUMAN Transforming acidic coiled-coil-c...1474.5     34.3     27     42GO:0005794; C:Golgi apparatus; IDA:HPA.::GO:0005815; C:microtubule organizing center; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IDA:HPA.
GO:0035257; F:nuclear hormone receptor binding; IDA:MGI.
14A5DUA3    627   SNU71_LODEL U1 small nuclear ribonucleoprotei...885     33.9     28     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
15Q6CCZ1    974   PRP5_YARLI Pre-mRNA-processing ATP-dependent ...1266.5     33.5     28     42GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
16A9KTE0    292   HSLO_CLOPH 33 kDa chaperonin OS=Clostridium p...1447.6     32.7     24     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0051082; F:unfolded protein binding; IEA:InterPro.
GO:0006457; P:protein folding; IEA:InterPro.
17B3DX88    506   LEU1_METI4 2-isopropylmalate synthase OS=(str...688.3     33.1     34     51
GO:0003852; F:2-isopropylmalate synthase activity; IEA:EC.
GO:0009098; P:leucine biosynthetic process; IEA:UniProtKB-KW.
records
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