Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
Home About FGC Use Cases Species List

UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YGR005C
Length:
400
Number of sequences:
5887
Description:
YGR005C TFG2 SGDID:S000003237, Chr VII from 505859-504657, Genome Release 64-1-1, reverse complement, Verified ORF, "TFIIF (Transcription Factor II) middle subunit; involved in both transcription initiation and elongation of RNA polymerase II; homologous to human RAP30"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P41896    400   T2FB_YEAST Transcription initiation factor II...4000     825     100     100GO:0005674; C:transcription factor TFIIF complex; IDA:SGD.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0000991; F:core RNA polymerase II binding transcription factor activity; IDA:SGD.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
GO:0001111; P:promoter clearance from RNA polymerase II promoter; IC:SGD.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0051123; P:RNA polymerase II transcriptional preinitiation complex assembly; IC:SGD.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; IDA:SGD.::GO:0001174; P:transcriptional start site selection at RNA polymerase II promoter; IMP:SGD.
2O94424    307   T2FB_SCHPO Transcription initiation factor II...860.000000007     60.5     38     56GO:0005816; C:spindle pole body; IDA:PomBase.::GO:0005674; C:transcription factor TFIIF complex; ISS:PomBase.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0000991; F:core RNA polymerase II binding transcription factor activity; ISS:PomBase.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; ISS:PomBase.
3Q54KT7    241   T2FB_DICDI General transcription factor IIF s...820.11     37.7     28     56GO:0005674; C:transcription factor TFIIF complex; ISS:dictyBase.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; ISS:dictyBase.
4Q03123    264   T2FB_XENLA General transcription factor IIF s...560.005     42     38     63GO:0005674; C:transcription factor TFIIF complex; IEA:InterPro.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; IEA:InterPro.
5Q8R0A0    249   T2FB_MOUSE General transcription factor IIF s...960.006     41.6     31     51GO:0005674; C:transcription factor TFIIF complex; IEA:InterPro.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006367; P:transcription initiation from RNA polymerase II promoter; IEA:InterPro.
6Q01750    249   T2FB_RAT General transcription factor IIF sub...960.01     40.8     31     50GO:0005674; C:transcription factor TFIIF complex; IEA:InterPro.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:RGD.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; IEA:InterPro.
7Q2T9L9    249   T2FB_BOVIN General transcription factor IIF s...960.016     40.4     31     50GO:0005674; C:transcription factor TFIIF complex; IEA:InterPro.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; IEA:InterPro.
8P13984    249   T2FB_HUMAN General transcription factor IIF s...960.012     40.8     31     49GO:0015630; C:microtubule cytoskeleton; IDA:HPA.::GO:0005674; C:transcription factor TFIIF complex; IEA:InterPro.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0006370; P:mRNA capping; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0050434; P:positive regulation of viral transcription; TAS:Reactome.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; TAS:Reactome.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; TAS:Reactome.::GO:0016032; P:viral reproduction; TAS:Reactome.
9P41900    277   T2FB_DROME General transcription factor IIF s...780.0003     45.8     35     56GO:0005674; C:transcription factor TFIIF complex; IDA:FlyBase.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0001096; F:TFIIF-class transcription factor binding; IPI:FlyBase.
GO:0032968; P:positive regulation of transcription elongation from RNA polymerase II promoter; IDA:FlyBase.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:FlyBase.::GO:0060261; P:positive regulation of transcription initiation from RNA polymerase II promoter; IDA:FlyBase.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; ISS:FlyBase.
10Q98PL1    309   HPRK_MYCPU HPr kinase/phosphorylase OS=Mycopl...1150.19     37.4     30     47
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0004674; F:protein serine/threonine kinase activity; IEA:UniProtKB-KW.::GO:0000155; F:two-component sensor activity; IEA:InterPro.
GO:0005975; P:carbohydrate metabolic process; IEA:UniProtKB-KW.::GO:0006109; P:regulation of carbohydrate metabolic process; IEA:InterPro.
11Q9JIR0    1847   RIMB1_RAT Peripheral-type benzodiazepine rece...411.8     34.7     39     71GO:0005739; C:mitochondrion; IDA:RGD.
12P57435    326   HOLB_BUCAI DNA polymerase III subunit delta' ...723.5     33.1     28     47GO:0009360; C:DNA polymerase III complex; IEA:InterPro.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
13Q8SX83    5560   SPEN_DROME Protein split ends OS=Drosophila m...754.4     33.5     28     61GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0007411; P:axon guidance; IMP:UniProtKB.::GO:0007173; P:epidermal growth factor receptor signaling pathway; IMP:UniProtKB.::GO:0048106; P:establishment of thoracic bristle planar orientation; IMP:FlyBase.::GO:0007403; P:glial cell fate determination; IMP:UniProtKB.::GO:0008586; P:imaginal disc-derived wing vein morphogenesis; IMP:FlyBase.::GO:0035321; P:maintenance of imaginal disc-derived wing hair orientation; IMP:FlyBase.::GO:0007400; P:neuroblast fate determination; IMP:UniProtKB.::GO:0007422; P:peripheral nervous system development; IMP:FlyBase.::GO:0006355; P:regulation of transcription, DNA-dependent; IMP:UniProtKB.::GO:0007379; P:segment specification; IMP:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IMP:UniProtKB.::GO:0016055; P:Wnt receptor signaling pathway; IMP:UniProtKB.
14P50541    243   MXI1_DANRE Max-interacting protein 1 OS=Danio...465.2     32.3     35     59GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
15O09015    228   MXI1_RAT Max-interacting protein 1 OS=Rattus ...465.5     32.3     35     57GO:0005737; C:cytoplasm; IDA:RGD.::GO:0005634; C:nucleus; IDA:RGD.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IDA:RGD.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
16P50539    228   MXI1_HUMAN Max-interacting protein 1 OS=Homo ...465.9     32.3     35     57GO:0005634; C:nucleus; TAS:ProtInc.
GO:0003677; F:DNA binding; TAS:ProtInc.::GO:0003714; F:transcription corepressor activity; TAS:ProtInc.
GO:0042994; P:cytoplasmic sequestering of transcription factor; TAS:ProtInc.::GO:0008285; P:negative regulation of cell proliferation; TAS:ProtInc.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
17P50540    228   MXI1_MOUSE Max-interacting protein 1 OS=Mus m...466.2     32.3     35     57GO:0005634; C:nucleus; IDA:MGI.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IDA:MGI.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
18Q8RBC5    233   Y897_THETN UPF0758 protein TTE0897 OS=100824 ...448.9     31.6     36     57
records
Previous ‹‹ ›› Next Total records: 18 1 - 18
Elimate unknown annotation:
Filter for keyword on hit description:
Select upper E value:
Select lower bit score:
Select lower %idenity value:
Select lower %positive value:
Taxonomic division:
Lower limit on hit length:
Lower limit on alignment length::